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Involvement of UBA2C in ambient temperature-dependent flowering by promoting FLM transcription

ABSTRACT: This SuperSeries is composed of the SubSeries listed below.

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE165434 | GEO | 2021/10/28

REPOSITORIES: GEO

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Involvement of UBA2C in ambient temperature-dependent flowering by promoting FLM transcription [ChIP-seq]

Project description:Ambient temperature dependent flowering time is an important feature that is required for plants to reproduce in various environmental conditions. The rising global temperature poses a significant challenge to the growth and reproduction of plants. In Arabidopsis thaliana, FLM-β, a major splicing isoform of the flowering repressor gene FLOWERING LOCUS M, is down-regulated in response to increasing temperature and represents a critical mechanism for plants to respond to temperature changes. However, it is unknown how the transcript level of FLM-β is down-regulated. Here we identify an RRM domain-containing protein, UBA2C, as a previously uncharacterized flowering repressor by forward genetic screening. We demonstrate that UBA2C directly binds to FLM chromatin and facilitates FLM transcription predominantly by inhibiting the histone H3K27 trimethylation, a histone mark related to transcriptional repression. At FLM chromatin, the histone H3K27 trimethylation is enhanced in response to increasing temperatures. Depletion of UBA2C weakens the response of FLM transcription and H3K27 trimethylation to temperature changes. UBA2C forms multiple puncta in the nucleus and the number of puncta increases with increasing temperatures. UBA2C contains a prion-like domain (PrLD) that is responsible for forming puncta in the nucleus in vivo. These results not only identify a previously unknown flowering-time regulator but also reveal the mechanism by which the regulator controls flowering time in response to temperature changes.

2021-10-28 | GSE165432 | GEO

Involvement of UBA2C in ambient temperature-dependent flowering by promoting FLM transcription [RNA-seq]

2021-10-28 | GSE165433 | GEO

Involvement of UBA2C in ambient temperature-dependent flowering by promoting FLM transcription

Project description:Involvement of UBA2C in ambient temperature-dependent flowering by promoting FLM transcription

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Involvement of UBA2C in ambient temperature-dependent flowering by promoting FLM transcription [RNA-seq]

Project description:Involvement of UBA2C in ambient temperature-dependent flowering by promoting FLM transcription [RNA-seq]

| PRJNA694619 | ENA

Involvement of UBA2C in ambient temperature-dependent flowering by promoting FLM transcription [ChIP-seq]

Project description:Involvement of UBA2C in ambient temperature-dependent flowering by promoting FLM transcription [ChIP-seq]

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Spheroid Formation and Recovery of Human Foreskin Fibroblasts and T98G Glioma Cells at Ambient Temperature

Project description:This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

2006-12-01 | E-GEOD-4219 | biostudies-arrayexpress

Modulation of Ambient Temperature-Dependent Flowering in Arabidopsis thaliana by Natural Variation of FLOWERING LOCUS M.

Project description:Plants integrate seasonal cues such as temperature and day length to optimally adjust their flowering time to the environment. Compared to the control of flowering before and after winter by the vernalization and day length pathways, mechanisms that delay or promote flowering during a transient cool or warm period, especially during spring, are less well understood. Due to global warming, understanding this ambient temperature pathway has gained increasing importance. In Arabidopsis thaliana, FLOWERING LOCUS M (FLM) is a critical flowering regulator of the ambient temperature pathway. FLM is alternatively spliced in a temperature-dependent manner and the two predominant splice variants, FLM-ß and FLM-?, can repress and activate flowering in the genetic background of the A. thaliana reference accession Columbia-0. The relevance of this regulatory mechanism for the environmental adaptation across the entire range of the species is, however, unknown. Here, we identify insertion polymorphisms in the first intron of FLM as causative for accelerated flowering in many natural A. thaliana accessions, especially in cool (15°C) temperatures. We present evidence for a potential adaptive role of this structural variation and link it specifically to changes in the abundance of FLM-ß. Our results may allow predicting flowering in response to ambient temperatures in the Brassicaceae.

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H3K36me3 histone modification and regulation of ambient temperature-induced alternative splicing in Arabidopsis

Project description:This SuperSeries is composed of the SubSeries listed below.

2017-05-10 | GSE85282 | GEO

Spheroid Formation and Recovery of Human Foreskin Fibroblasts and T98G Glioma Cells at Ambient Temperature

Project description:This SuperSeries is composed of the SubSeries listed below.

2006-12-01 | GSE4219 | GEO