Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Comprehensive characterization of cistrome and epicistrome involved in fruit ripening [ChIP-seq]

ABSTRACT: Here we generated ChIP-seq data of a tomato ERF family TF Sl-ERF_F_4 in red fruit stage and green fruit stage to validate the accuracy of DAP-seq data.

ORGANISM(S): Solanum lycopersicum

PROVIDER: GSE173208 | GEO | 2023/06/30

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Transcription profiling of Capsicum fruit ripening process

Project description:Pepper fruits at four different developmental stages were collected: early fruit [EF; 1 cm long; 7 days after pollination (dap)], mature green fruit (MG; 6-7 cm length; 20 dap), breaking or turning red fruit (BR; fruit are partially red; 35 dap), and red ripe fruit (RR; fully red; 40 dap). Tomato fruits at corresponding developmental stages were also collected: EF (less than 1cm; 7 dap), MG (40 dap), BR (50 dap), and RR (55 dap). For the monitoring of fruit-specific and fruit ripening-related genes, we did array hybridization by using the leaves as a common reference and each corresponding fruit developmental stage sample.

2005-03-01 | E-MEXP-260 | biostudies-arrayexpress

Comprehensive characterization of cistrome and epicistrome involved in fruit ripening [green fruit]

Project description:The biggest advantage of DAP-seq is that it’s capable of measuring the influence of DNA methylation on TF binding, without disturbing of other epigenetic markers. Here, by utilizing DNA affinity purification sequencing, we generated two binding sets which were incubated with DNA libraries that representing methylomes in different developmental stage. And we made the most of our data to predict DNA methylation impact on TF binding in two dimensions: prediction by comparing genome-wide binding signal in motif-matched regions with or without methylation in single stage, and prediction by comparing binding signal variation in motif-matched regions with or without methylation variation.

2023-06-30 | GSE172249 | GEO

Comprehensive characterization of cistrome and epicistrome involved in fruit ripening [red fruit]

2023-06-30 | GSE172260 | GEO

Comprehensive characterization of cistrome and epicistrome involved in fruit ripening [Bisulfite-seq]

2023-06-30 | GSE173212 | GEO

Comprehensive characterization of cistrome and epicistrome involved in fruit ripening [pre-experiment]

2023-06-30 | GSE171493 | GEO

Comprehensive characterization of cistrome and epicistrome involved in fruit ripening [green fruit]

Project description:Comprehensive characterization of cistrome and epicistrome involved in fruit ripening [green fruit]

| PRJNA722524 | ENA

Comprehensive characterization of cistrome and epicistrome involved in fruit ripening [red fruit]

Project description:Comprehensive characterization of cistrome and epicistrome involved in fruit ripening [red fruit]

| PRJNA722537 | ENA

Comprehensive characterization of cistrome and epicistrome involved in fruit ripening

Project description:This SuperSeries is composed of the SubSeries listed below.

2023-06-30 | GSE173213 | GEO

Comprehensive characterization of cistrome and epicistrome involved in fruit ripening

Project description:Comprehensive characterization of cistrome and epicistrome involved in fruit ripening

| PRJNA724697 | ENA

Gene expression in three stages of ripening tomato fruit

Project description:Gene expression in three stages of ripening tomato fruit (variety Ailsa Craig) was determined with the EUTOM3 Affymetrix array in order to compare with degradrome sequencing data from study GSE42661, treated as RNAseq. three replicates of each stage (MG, mature green; T, turning/breaker; RR, red ripe) were hybridized; Expression values were normalized for each sample and reported by iTAG2.3 cDNA identifier in the accompanying matrix table.

2013-04-05 | E-GEOD-42783 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data