Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genome-wide reconstruction of the bacterial response to single and multiple stress in Shigella flexneri 2a str. 2457T

ABSTRACT: This SuperSeries is composed of the SubSeries listed below.

ORGANISM(S): Shigella flexneri Escherichia coli

PROVIDER: GSE173348 | GEO | 2024/12/22

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Genome-wide reconstruction of the bacterial response to single and multiple stress in Shigella flexneri 2a str. 2457T (S. flexneri RNA-Seq)

Project description:The genome-wide analysis was carried out to find out the genes responsible for single and multiple stress in Shigella flexneri 2a str. 2457T. This result can be offered to explain bacterial responses, such as the capacity to survive and elicit infections.

2024-12-22 | GSE173346 | GEO

Genome-wide reconstruction of the bacterial response to single and multiple stress in Shigella flexneri 2a str. 2457T (E. coli RNA-Seq)

Project description:The genome-wide analysis was carried out to find out the genes responsible for single and multiple stress in Shigella flexneri 2a str. 2457T. E. coli used as a reference strain. This is RNA-seq data of E.coli K-12 MG1655.

2024-12-22 | GSE173345 | GEO

Genome-wide reconstruction of the bacterial response to single and multiple stress in Shigella flexneri 2a str. 2457T (S fflexneri ChIP-exo)

Project description:The genome-wide analysis were carried out to find out the genes reponsible for single and multiple stress in Shigella flexneri 2a str. 2457T. This results can be offered to explain bacterial responses such as the capacity of survive and elicit infections.

2024-12-22 | GSE173347 | GEO

Shigella flexneri 2a str. 2457T

Project description:Shigella flexneri 2a str. 2457T genome sequencing project

| PRJNA48255 | ENA

Shigella flexneri 2a str. 2457T

Project description:Human-specific pathogen that causes endemic dysentery

| PRJNA408 | ENA

Shigella flexneri 2a str. 2457T

Project description:Extensive loss of sugar catabolism genes enhances Shigella invasion, and a lower pH in the colon prevents Shigella infection

| PRJNA324519 | ENA

Shigella flexneri 2a str. 2457T

Project description:Identification of transcriptional pathways associated with enviromental modification

| PRJNA237637 | ENA

Shigella flexneri 2a str. 2457T

Project description:Expression data from wild type and deltaS4473 Shigella flexneri 2457T

| PRJNA175114 | ENA

Shigella flexneri 2a str. 2457T

Project description:Shigella flexneri 2a str. 2457T Raw sequence reads

| PRJNA328875 | ENA

Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T.

Project description:We determined the complete genome sequence of Shigella flexneri serotype 2a strain 2457T (4,599,354 bp). Shigella species cause >1 million deaths per year from dysentery and diarrhea and have a lifestyle that is markedly different from those of closely related bacteria, including Escherichia coli. The genome exhibits the backbone and island mosaic structure of E. coli pathogens, albeit with much less horizontally transferred DNA and lacking 357 genes present in E. coli. The strain is distinctive in its large complement of insertion sequences, with several genomic rearrangements mediated by insertion sequences, 12 cryptic prophages, 372 pseudogenes, and 195 S. flexneri-specific genes. The 2457T genome was also compared with that of a recently sequenced S. flexneri 2a strain, 301. Our data are consistent with Shigella being phylogenetically indistinguishable from E. coli. The S. flexneri-specific regions contain many genes that could encode proteins with roles in virulence. Analysis of these will reveal the genetic basis for aspects of this pathogenic organism's distinctive lifestyle that have yet to be explained.

| S-EPMC153260 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data