Transcriptomics

Dataset Information

0

The prevalence of human cytomegalovirus in colorectal cancer and viral gene expression profiles


ABSTRACT: Five HCMV (+) CRC tissues detected by PCR were selected for RNA-seq. GEPs were pre-processed by Cutadapter and FastQC to remove jointed reads and low-quality reads. Tophat (v.2.0.0) was used to compare the sequences with Homo sapiens and HCMV genomes. The GEPs of HCMV was determined by Integrated Genomics Viewer (IGV) and Partek® Genomics Suite™ (version 6.5 beta, Partek Inc., St. Louis, MO, USA).

ORGANISM(S): Homo sapiens

PROVIDER: GSE173609 | GEO | 2021/04/30

REPOSITORIES: GEO

Dataset's files

Source:
Action DRS
Other
Items per page:
1 - 1 of 1

Similar Datasets

2016-12-17 | GSE92520 | GEO
2020-05-07 | E-MTAB-8558 | biostudies-arrayexpress
2016-12-03 | E-MTAB-4958 | biostudies-arrayexpress
2013-08-28 | E-GEOD-50379 | biostudies-arrayexpress
2012-03-30 | E-GEOD-36948 | biostudies-arrayexpress
2003-09-20 | GSE672 | GEO
2014-04-15 | E-GEOD-50747 | biostudies-arrayexpress
2021-04-06 | E-MTAB-10000 | biostudies-arrayexpress
2022-01-07 | E-MTAB-10011 | biostudies-arrayexpress
2019-01-16 | GSE113394 | GEO