Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Effect of planting density on leaf yield and active compound accumulation in Ginkgo biloba

ABSTRACT: We sequenced mRNA of G. biloba leaves from different planting densities using the Illumina HiSeq4000 platform. We identified the transcriptome changes in leaves , which provided valuable information for uncovering the molecular mechanisms of flavonoid accumulation in G. biloba under different densities.

ORGANISM(S): Ginkgo biloba

PROVIDER: GSE176193 | GEO | 2021/06/05

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Rejuvenation improves the flavonoid accumulation in Ginkgo biloba leaves

Project description:We sequenced mRNA of G. biloba leaves from truncation treatment and control using the Illumina HiSeq4000 platform. We identified the transcriptome changes in leaves between truncation group and control group, which provided valuable information for uncovering the molecular mechanisms of flavonoid accumulation in G. biloba under rejuvenation.

2020-06-15 | GSE149736 | GEO

Transcriptomic analysis reveals mechanisms of leaf coloration between the leaf color mutant and normal green leaves in Ginkgo biloba

Project description:We sequenced mRNA from the leaves of mutant and normal green leaves of Ginkgo biloba using the Illumina HiSeq4000 platform to generate the transcriptome dynamics that may serve as a gene expression profile blueprint for leaf color variation of the mutant in Ginkgo biloba.

2017-11-01 | GSE103827 | GEO

Changes in autumn leaf senescence and coloration in Ginkgo biloba

Project description:We sequenced mRNA from Ginkgo biloba leaves grown at different developmental stages using the Illumina HiSeq4000 platform to generate the transcriptome dynamics that may serve as a gene expression profile blueprint for different response patterns during autumn leaf senescence and coloration. These results contribute to the elucidation of the molecular mechanisms involved in the leaf coloration and senescence in G. biloba as well as to the identification of candidate genes involved in this process.

2019-10-19 | GSE139096 | GEO

Identification and characterization of microRNA expression in Ginkgo biloba L. leaves

Project description:High-throughput small RNA sequencing were performed to identify a large number of miRNAs and their targets in mature female and male G. biloba leaves for the first time. We ascertained that the regulatory networks of the miRNAs are involved in many different primary biological processes based on potential target designations. Our study is the first to provide useful information for uncovering the regulatory networks of miRNAs in basal gymnosperm G. biloba leaves. small RNA sequencing in female and male leaves of G. biloba

2015-07-13 | E-GEOD-65229 | biostudies-arrayexpress

UV-B promotes flavonoids synthesis in Ginkgo biloba leaves

Project description:We conducted RNA-seq from the Ginkgo leaves after UV-B treatment,and constructed the molecular regulatory network of flavonoids synthesis under UV-B radiation in G. biloba.

2019-12-13 | GSE141890 | GEO

Identification and characterization of microRNA expression in Ginkgo biloba L. leaves

2015-07-13 | GSE65229 | GEO

Genome-wide identification and characterization of novel lncRNAs in Ginkgo biloba leaves

Project description:To explore the overall long noncoding RNA (lncRNA) involved in major developmental stages of Ginkgo biloba leaves , we deeply sequenced samples of leaves from different developmental stages (from April to October) using strand-specific RNA sequencing (ssRNA-seq) menthod. We obtained 27.44 Gb raw data and identified 1323 novel lncRNAs. We also categorized the novel lncRNAs as intergenic, intronic, antisense and sense based on their location on theGinkgo biloba genome. Furthermore, lncRNAs targeted protein-coding genes were predicted and functional annotated. In addition, we constructed a network of interactions between ncRNAs (miRNAs, lncRNA) and mRNAs. Our results suggest that the identified novel lncRNAs are important in modulating development process of Ginkgo biloba, and provide a rich resource for further research on the function of these novel lncRNAs.

2018-05-01 | GSE109917 | GEO

Construction and analysis of miRNA library in gold-colored mutant leaves of Ginkgo biloba L.

Project description:High-throughput RNA, sRNA and degradome sequencing were performed to identify a large number of miRNAs in G. biloba leaf to provide useful information for uncovering the regulatory networks of color formation in G. biloba leaves.

2018-11-11 | GSE122410 | GEO

Rejuvenation improves the flavonoid accumulation in Ginkgo biloba leaves

Project description:Rejuvenation improves the flavonoid accumulation in Ginkgo biloba leaves

| PRJNA629818 | ENA

Ginkgo biloba

Project description:Identification and characterization of microRNA expression in Ginkgo biloba L. leaves

| PRJNA273452 | ENA