Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

High-throughput sequencing of small RNAs from different developmental stages of tomato fruits

ABSTRACT: Comparison of endogenous small RNA profiles from different developmental stages of tomato fruits

ORGANISM(S): Solanum lycopersicum

PROVIDER: GSE18110 | GEO | 2011/06/02

SECONDARY ACCESSION(S): PRJNA119405

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

High-throughput sequencing of small RNAs from different developmental stages of tomato fruits

Project description:Comparison of endogenous small RNA profiles from different developmental stages of tomato fruits Size fractionated small RNA from total RNA extracts was ligated to adaptors, purified again and reverse transcribed. After PCR amplification the sample was subjected to Solexa/Illumina high throughput pyrosequencing. Please see www.illumina.com for details of the sequencing technology.

2011-06-02 | E-GEOD-18110 | biostudies-arrayexpress

Microarray analysis of gene expression from different developmental stages of the tomato fruit

2012-08-29 | GSE22300 | GEO

RNA sequencing of slgols2 tomato fruits

Project description:To explore the molecular mechanism via which the galactinol synthase 2 (slgols2) affects Chl accumulation and chloroplast development, the RNA-seq experiment was conducted using slgols2 mutant and WT tomato fruits.

2024-03-12 | GSE261229 | GEO

Global transcriptome profiling of AtJUB1-OX and WT fruits at mature green (MG) and breaker+7 developmental stages.

Project description:To understand the AtJUB1 mediated regulation of tomato fruit development. To test how the NAC transcription factor JUNGBRUNNEN1 from Arabidopsis thaliana (AtJUB1, identical to ANAC042; At2g43000) affects the development of tomato fruits, AtJUB1-GFP was expressed in transgenic tomato plants under the control of the CaMV 35S promoter. AtJUB1-GFP fusion protein was previously shown to encode a functionally active transcription factor in Arabidopsis (Wu et al., 2012). We then performed gene expression profiling of fruits from AtJUB1-GFP lines (AtJUB1-OX plants) and non-modified wild-type (WT) plants. Fruits at two developmental stages, namely mature green (MG) and Breaker+7 days (B+7), were analysed. To this end, the pericarp was separated from the rest of the fruits and quickly frozen in liquid nitrogen for subsequent RNA extraction. Gene expression analysis was performed using GeneChip Tomato Genome Arrays (Affymetrix). Probe preparation and microarray hybridizations were performed by ATLAS Biolabs (Berlin, Germany).

2017-03-31 | GSE87507 | GEO

Expression data from tomato fruits silencing gene Asr1

Project description:ASR1 is a transcription factor widely present in plants that is involved in stress responses. In this work, we have silenced ASR1 in tomato fruits using an anti-sense construct and analysed the gene expression in two independent transgenic lines (AS5 and AS17) and in wild-type (WT) fruits.

2021-06-09 | GSE163738 | GEO

Microarray analysis of gene expression from different developmental stages of the tomato fruit

Project description:The goal of this research was to measure the gene expression levels thoughout 10 stages of tomato fruit development. Whole buds, flowers or fruits were collected at various developmental timepoints. Total RNA was extracted from 10 stages of flower and fruit development. A single technical and biological repeat was performed. cDNA was amplified and labelled using standard Affymetrix protocols.

2012-08-29 | E-GEOD-22300 | biostudies-arrayexpress

Transcription profiling of tomato - wax biosynthesis of PS mutant fruits

Project description:Mature green fruits of the tomato (Solanum lycopersicum L.) cultivar John Baer and Pearson were investigated (fruit developmental category II). John Baer wild type, John Baer LA0063 and Pearson wild type, Pearson 2-303 fruits were used. Tomato mutant plants LA0063 and 2-303 were positional sterile (PS mutants). Samples contained exclusively the fruit peel, which was removed with a scalpel to a depth of approximately 1 mm. After sampling point the plant material was immediately frozen in liquid nitrogen and stored at -80 C until use.

2009-06-09 | E-MEXP-2164 | biostudies-arrayexpress

Transcription profiling of wild type and DelilaRosea over-expressing tomato fruits

Project description:gene expression analysis of wild type and DelilaRosea overexpressing microtom tomato fruits

2008-12-01 | E-MEXP-1830 | biostudies-arrayexpress

High-throughput pyrosequencing of endogenous small RNAs from Solanum lycopersicum leaf and fruit

Project description:Comparison of the endogenous small RNA content of tomato leaves and fruits.

2008-08-22 | GSE12081 | GEO

RNA sequencing of slgols2 tomato fruits

Project description:RNA sequencing of slgols2 tomato fruits

| PRJNA1085995 | ENA