Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Single ATAC-seq of subfractions within hematopoietic stem cells in bone marrow

ABSTRACT: Purpose: The goals of this study are to elucidate the underlying mechanism for the regulation of HSC divisions. Methods: One hundred thousand cells of subfractions within the HSC fraction were sorted. These cells were subjected to ATAC-sequence by using 10X Genomics Chromium Next GEM Single Cell ATAC Reagent Kits v1.1. The sequence reads that passed quality filters were analyzed by FASTX-toolkit.

ORGANISM(S): Mus musculus

PROVIDER: GSE187444 | GEO | 2022/01/19

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

ATAC-seq of subfractions within hematopoietic stem cells in bone marrow

Project description:Purpose: The goals of this study are to elucidate the underlying mechanism for the regulation of HSC divisions. Methods: Fifteen thousand cells subfractions within the HSC fraction were sorted. These cells were subjected to ATAC-seq using Hi-seq. The sequence reads that passed quality filters were analyzed by FASTX-toolkit.

2022-01-19 | GSE187014 | GEO

ATAC-seq of hematopoietic stem cells in bone marrow after 5-FU administration

Project description:Purpose: The goals of this study are to elucidate the underlying mechanism for the regulation of HSC divisions. Methods: Before or after wild type (WT) mice were treated with 5-fluorouracil (5-FU), 15000 cells of HSCs were sorted. These cells were subjected to ATAC-seq using Next-seq. The sequence reads that passed quality filters were analyzed by FASTX-toolkit.

2022-01-19 | GSE164281 | GEO

mRNA profiles of subfractions within hematopoietic stem cells in bone marrow

Project description:Purpose: The goals of this study are to elucidate the underlying mechanism for the regulation of HSC divisions. Methods: One hundred cells of subfractions within the HSC fraction were sorted. These cells were subjected to mRNA sequence using Next-seq. The sequence reads that passed quality filters were analyzed by CLC genomic workbench.

2022-01-19 | GSE187376 | GEO

AhR in the amelioration of Autoimmune Hepatitis

Project description:10X Genomics Chromium Next GEM Single cell V(D)J reagent kits v1.1 was used to process single cell suspensions from Naïve or Concanavalin A exposed mice treated with vehicle, TCDD, or FICZ. The V(D)J enrichment was omitted.

2022-05-23 | GSE201006 | GEO

mRNA profiles of hematopoietic stem and progenitor cells in bone marrow

Project description:Purpose: The goals of this study are to elucidate the underlying mechanism for the regulation of HSC divisions. Methods: Five thousand cells of subfractions within the HSC fraction were sorted. These cells were subjected to mRNA sequence using Next-seq. The sequence reads that passed quality filters were analyzed by CLC genomic workbench.

2022-01-19 | GSE186956 | GEO

ATAC-seq of subfractions within hematopoietic stem cells in bone marrow

Project description:ATAC-seq of subfractions within hematopoietic stem cells in bone marrow

| PRJNA777264 | ENA

Expression data from bone marrow CLP and B-cell progenitor subfractions.

Project description:Expression profiling of CLP subfractions (with different potential to develop into T-cells) and B-cell progenitors. Keywords: cell type comparison, B-cell progenitor, common lymphoid progenitor cells (CLP)

2008-06-29 | GSE11110 | GEO

ae7152fd-848e-4861-878a-e47a458b088d - samples

Project description:CD8 Tcells were FACS sorted and processed with 10x Genomics Chromium Next GEM SingleCell V(D)J Reagents Kits v1.1 sequencing. In total 6 samples were processed. Fastq files are supplied.

| EGAD00001010005 | EGA

8aa78f56-5525-4cf0-b639-7068f937e7e2 - samples

Project description:Regulatory Tcells were FACS sorted and processed with 10x Genomics Chromium Next GEM SingleCell V(D)J Reagents Kits v1.1 sequencing. In total 17 samples were processed. Fastq files are supplied.

| EGAD00001007661 | EGA

98e036ed-6150-46d3-9dac-ef1113880425 - samples

| EGAD00001010007 | EGA