Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arabidopsis thaliana mutant leaves treated with Pseudomonas syringae ES4326

ABSTRACT: In order to better understand the transcriptional networks triggered by pathogen inoculation, we monitored gene expression in leaves of mutant Arabidopsis plants, inoculated with Pseudomonas syringae ES4326 and wild type Col-0 plants grown in parallel. Individual leaves were injected in the morning using a needle-less syringe with 10E5 cfu cm-2 PsmES4326 (suspended in 5 mM MgSO4). For the wild type, leaves were also mock treated with 5 mM MgSO4. Leaves were harvested 24 hours later. Plants were grown in pots with BM-2 soil (Berger Peat Moss Ltd, Quebec, Canada) at a density of 9 plants per pot and kept at 22 degrees Celsius with 75% humidity and a 12 hour day length. Keywords: Expression profilling by array

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE18978 | GEO | 2009/11/18

SECONDARY ACCESSION(S): PRJNA121145

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Arabidopsis thaliana mutant leaves treated with Pseudomonas syringae ES4326

Project description:In order to better understand the transcriptional networks triggered by pathogen inoculation, we monitored gene expression in leaves of mutant Arabidopsis plants, inoculated with Pseudomonas syringae ES4326 and wild type Col-0 plants grown in parallel. Individual leaves were injected in the morning using a needle-less syringe with 10E5 cfu cm-2 PsmES4326 (suspended in 5 mM MgSO4). For the wild type, leaves were also mock treated with 5 mM MgSO4. Leaves were harvested 24 hours later. Plants were grown in pots with BM-2 soil (Berger Peat Moss Ltd, Quebec, Canada) at a density of 9 plants per pot and kept at 22 degrees Celsius with 75% humidity and a 12 hour day length. Keywords: Expression profiling by array 24 samples were used in this experiment

2009-11-17 | E-GEOD-18978 | biostudies-arrayexpress

Transcription profiling of Arabidopsis Drebalpha and Drebbeta mutants

Project description:Transgenic Arabidopsis plants were grown in plastic pots filled with peat moss for 3 weeks (principal growth stage 1.07-1.08) under a 16 h light/8 h dark regimen (40 ± 10 ?mol photons/m2/s) at 22 C

2009-08-07 | E-MEXP-2175 | biostudies-arrayexpress

dehydration

Project description:Wild-type A. thaliana plants (Arabidopsis thaliana L. ecotype-Columbia) were grown in plastic pots filled with peat moss for 3 weeks (principal growth stage 1.07M-^V1.08) under a 16 h light/8 h dark regimen (40 M-1 10 umol photons/m2/s) at 22C. Dehydration treatment: The 3-week-old plants were grown for 6 days without watering.

2014-03-03 | E-MEXP-3999 | biostudies-arrayexpress

Transcription profiling of leaves 1 and 2 from Arabidopsis plants treated with naphtylacetic acid and incubated for 15 mins or 2 hours

Project description:Arabidopsis thaliana Col-0 wildtype plants were grown on soil (Jiffy7 peat pellets 42 mm) to the respective developmental stage (1.04 or 1.08 Boyes scale). The plants were sprayed with 100 µM Naphtylacetic acid and incubated for 15 min or 2 hours under normal growth conditions. Leaves 1 and 2 were harvested and immediately frozen in liquid nitrogen.

2007-05-16 | E-CAGE-46 | biostudies-arrayexpress

Transcription profiling of Arabidopsis leaves 1 and 2 at Boyes stages 1.04 and 1.08 in response to treatment with Abscisic acid

Project description:Arabidopsis thaliana Col-0 wildtype plants were grown on soil (Jiffy7 peat pellets 42 mm) to the respective developmental stage (1.04 or 1.08 Boyes scale). The plants were sprayed with 50 µM Abscisic acid and incubated for 15 min or 2 hours under normal growth conditions. Leaves 1 and 2 were harvested and immediately frozen in liquid nitrogen.

2006-10-31 | E-CAGE-48 | biostudies-arrayexpress

cold_1day

Project description:Wild-type A. thaliana plants (Arabidopsis thaliana L. ecotype-Columbia) were grown in plastic pots filled with peat moss for 3 weeks (principal growth stage 1.07M-^V1.08) under a 16 h light/8 h dark regimen (40 M-1 10 umol photons/m2/s) at 22C. Cold treatment: The 3-week-old plants were transferred from 22C to 4C and were grown for 1 day.

2014-03-03 | E-MEXP-4000 | biostudies-arrayexpress

Transcription profiling of Arabidopsis response to cold on soil

Project description:Arabidopsis plants were grown in plastic pots filled with peat moss for 3 weeks (principal growth stage 1.07-1.08) under a 16 h light/8 h dark regimen (40 ± 10 ?mol photons/m2/s) at 22 C. The light intensity was the same at 22 C and at 4 C. Plants were harvested 2 h later after lights were turned on. Cold treatment: The 3-week-old plants were transferred from 22 C to 4 C and were grown for 1 or 4 days.

2009-08-07 | E-MEXP-2173 | biostudies-arrayexpress

Identification of down stream genes in heat treated NCED3 mutants

Project description:To characterize plant HS-responsive genes, the transcriptome analysis of rice was conducted using microarray. Arabidopsis plants were grown in plastic pots filled with peat moss for 3 weeks (principal growth stage 1.07â1.08) under a 16 h light/8 h dark photoperiod (50 Â± 10 Î¼mol photons mâ2 sâ1) at 22Â°C, and were treated for 30 min at 37Â°C.

2017-02-23 | E-MTAB-4506 | biostudies-arrayexpress

Transcription profiling by array of heat-stressed Arabidopsis plants

Project description:To characterize plant heat stress-responsive genes and to clarify the heat stress-responsive transcription pathways, the transcriptome analysis of rice was conducted using microarray. Arabidopsis plants were grown in plastic pots filled with peat moss for 3 weeks (principal growth stage 1.07â1.08) under a 16 h light/8 h dark photoperiod (50 Â± 10 Î¼mol photons mâ2 sâ1) at 22Â°C, and were treated for 30 min at 37Â°C.

2017-02-28 | E-MTAB-4531 | biostudies-arrayexpress

Transcription profiling of Arabidopsis dehydration on soil

Project description:Arabidopsis plants were grown in plastic pots filled with peat moss for 3 weeks (principal growth stage 1.07-1.08) under a 16 h light/8 h dark regimen (40 ± 10 ?mol photons/m2/s) at 22 C.Dehydration treatment: The 3-week-old plants were grown for 2 or 3 days without watering. To obtain accurate results, we carefully raised single plants in Petri dishes, each containing an equal amount of soil. Soil moisture contents were calculated from soil dry weight. Untreated; the soil moisture content was 84.3%. Under dehydration, on the second day, the soil moisture content was 51.1%. Under dehydration, on the third day, the moisture content was 11.6%.

2009-08-07 | E-MEXP-2174 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data