Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ATAC-seq chromatin accessibility profiling in pancreatic islets isolated from Arid1aFl/Fl ; MIP-rtTA control and Arid1aFl/Fl; MIP-rtTA; TRE-Cre mice (Arid1a βKO) with/without pancreatectomy

ABSTRACT: To determine how ARID1A loss might regulate genes that were preferentially regulated on the gene expression level, we performed an assay for transposase accessible chromatin with high-throughput sequencing (ATAC-seq) on islets isolated from control and Arid1a β-cell knockout (βKO) mice at baseline and 6 days after 50% pancreatectomy (PPx).

ORGANISM(S): Mus musculus

PROVIDER: GSE201003 | GEO | 2022/04/21

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

ATAC-seq chromatin accessibility profiling in pancreatic islets isolated from Arid1aFl/Fl ; MIP-rtTA control and Arid1aFl/Fl; MIP-rtTA; TRE-Cre mice (Arid1a βKO) with/without pancreatectomy.

Project description:To determine how ARID1A loss might regulate genes that were preferentially regulated on the gene expression level, we performed an assay for transposase accessible chromatin with high-throughput sequencing (ATAC-seq) on islets isolated from control and Arid1a β-cell knockout (βKO) mice at baseline and 6 days after 50% pancreatectomy (PPx).

2022-03-22 | GSE199186 | GEO

RNA-Seq in pancreatic islets isolated from Arid1aFl/Fl control and Arid1aFl/Fl; UBC-CreERT2 mice (Arid1a KO) with/without pancreatectomy

Project description:To determine how ARID1A loss might regulate gene expression, we performed RNA-sequencing (RNA-seq) on islets isolated from control and Arid1a knockout (KO) mice at baseline and 6 days after 50% pancreatectomy (PPx).

2022-04-21 | GSE201002 | GEO

RNA-Seq in pancreatic islets isolated from Arid1aFl/Fl control and Arid1aFl/Fl; UBC-CreERT2 mice (Arid1a KO) with/without pancreatectomy.

2022-03-22 | GSE199187 | GEO

ATAC-seq chromatin accessibility profiling in pancreatic islets isolated from Arid1aFl/Fl MIP-rtTA control and Arid1aFl/Fl MIP-rtTA TRE-Cre mice (Arid1a βKO) with/without pancreatectomy.

Project description:ATAC-seq chromatin accessibility profiling in pancreatic islets isolated from Arid1aFl/Fl MIP-rtTA control and Arid1aFl/Fl MIP-rtTA TRE-Cre mice (Arid1a βKO) with/without pancreatectomy.

| PRJNA818718 | ENA

ATAC-seq chromatin accessibility profiling in pancreatic islets isolated from Arid1aFl/Fl MIP-rtTA control and Arid1aFl/Fl MIP-rtTA TRE-Cre mice (Arid1a βKO) with/without pancreatectomy

| PRJNA827843 | ENA

10 Week Post Partical Pancreatectomy

Project description:There are two groups of rats, Post 90% Partial Pancreatectomy (PPX) and the Sham group.

2020-06-26 | GSE134966 | GEO

4 Week Post Partical Pancreatectomy

Project description:There are two groups of rats, 1) Post 90% Partial Pancreatectomy (PPX) and the Sham Group.

2020-06-26 | GSE134963 | GEO

Transcription profiling of mouse islet growth after partial pancreatectomy and exendin-4 Treatment

Project description:Diabetes mellitus results from an inadequately functioning beta-cell mass. In the adult pancreas, beta-cell mass is dynamic, increasing to meet metabolic demands and decreasing with metabolic or injury insults. Exendin-4 (Ex-4) is a glucagon-like peptide-1 receptor agonist that augments beta-cell mass by increasing beta-cell neogenesis and proliferation and by reducing apoptosis. We utilized a cDNA microarray approach to identify genes that are differentially regulated during islet growth after Ex-4 treatment or a partial pancreatectomy (Ppx). Mice underwent 50% Ppx or sham operation and received Ex-4 or vehicle every 24 hours. cDNA prepared from total pancreatic RNA isolated at 12, 24 and 48 hrs after surgery was hybridized to the PancChip 4.0 microarray.

2005-12-01 | E-CBIL-5 | biostudies-arrayexpress

RNA-Seq in pancreatic islets isolated from Arid1aFl/Fl control and Arid1aFl/Fl UBC-CreERT2 mice (Arid1a KO) with/without pancreatectomy.

Project description:RNA-Seq in pancreatic islets isolated from Arid1aFl/Fl control and Arid1aFl/Fl UBC-CreERT2 mice (Arid1a KO) with/without pancreatectomy.

| PRJNA818717 | ENA

RNA-Seq in pancreatic islets isolated from Arid1aFl/Fl control and Arid1aFl/Fl UBC-CreERT2 mice (Arid1a KO) with/without pancreatectomy

Project description:RNA-Seq in pancreatic islets isolated from Arid1aFl/Fl control and Arid1aFl/Fl UBC-CreERT2 mice (Arid1a KO) with/without pancreatectomy

| PRJNA827844 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data