Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Effect of depletion of YTH family genes on gene expression in Nipponbera rices

ABSTRACT: To investigate the function YTH proteins in the regulation of gene expression, we established 12 transgenic lines in which each target gene has been knocked out by CRISPR/Cas9 or knocked down by siRNA. We then performed gene expression profiling analysis using data obtained from RNA-seq of 45 different transgenic lines.

ORGANISM(S): Oryza sativa

PROVIDER: GSE207213 | GEO | 2022/12/31

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Effect of depletion of RBM47 on gene expression on U87 glioma cells

Project description:To investigate the function of RBM47, we established U87 cell lines in which target gene has been knocked down by siRNA.

2023-02-01 | GSE202570 | GEO

Effect of depletion of SNHG14 on gene expression of MDA-MB-231 cells

Project description:To investigate the function of SNHG14 in breast cancer, we established MDA-MB-231 cell lines in which this gene has been knocked down by siRNA.

2024-04-03 | GSE228940 | GEO

Effect of depletion of KDM4C on gene expression of JAK2-mutated HEL erythroleukemia cells [RNA-seq]

Project description:To investigate the function of KDM4C in progression of leukemia, we established HEL-Cas9 cell lines in which the target gene has been knocked out by CRISPR/Cas9. We then performed transcriptome analysis using data obtained from RNA-seq of control or KDM4C depletd cells.

2022-05-18 | GSE203060 | GEO

Effect of podoplanin depletion on gene expressions in canine melanoma cell lines

Project description:To investigate the function of podoplanin, we established CMM2 and CMM12 canine melanoma cell lines in which podoplanin has been knocked out (KO) by CRISPR/Cas9. We then performed gene expression profiling analysis using data obtained from RNA-seq of control and podoplanin KO cell lines.

2022-07-18 | GSE208269 | GEO

Effect of depletion of alt-LAMA3 on gene expression of HEK293T cells

Project description:To investigate the depletion of altLAMA3, we established HEK293T cell lines in which alt-LAMA3 gene has been knocked out by CRISPR-Cas9. We then performed gene expression profiling analysis using data obtained from RNA-seq of 2 different cells

2022-06-17 | GSE205869 | GEO

Effect of depletion of TET3 on gene expression of HTR8-SVneo trophoblast cells.

Project description:To investigate the function TET3 in the regulation of DNA methylation, we established HTR8-SVneo cell lines in which target gene has been knocked down by siRNA. We then performed gene expression profiling analysis using data obtained from RNA-seq for three replicates.

2022-08-14 | GSE211010 | GEO

Effect of cisplatin in depletion MAGEA6 expression of esophageal cancer cells

Project description:To investigate cisplatin chemo-sensitivity in established KYSE 150/510 cell lines in which each target gene has been knocked out by CRISPR-Cas9. We performed gene expression profiling analysis using data obtained from RNA-seq of 8 different cells by three biological replicate.

2023-05-01 | GSE229973 | GEO

Effect of depletion of ALKBH5 on gene expression of HaCAT human keratinocyte cell line

Project description:To investigate the function of ALKBH5 in the regulation of keratinocyte cellular function, we established HaCAT cell lines in which ALKBH5 has been knocked down by siRNA. We then performed gene expression profiling analysis using data obtained from RNA-seq of 4 different cells from duplicate experiments.

2022-08-12 | GSE211076 | GEO

Effect of depletion of TFII-I or TRIM24 on Jurkat T cell activation.

Project description:To investigate the cooperative function TFII-I and TRIM24 in the regulation of T cell activation regulated genes, we established Jurkat Tat cells in which TFII-I was depleted by shRNA and TRIM24 was knocked out by CRISPR-Cas9. We then performed gene expression profiling analysis using data obtained from RNA-seq of cell lines stimulated by PMA and Ionomycin.

2022-12-28 | GSE221633 | GEO

Effect of depletion of USF1 or USF2 on Jurkat Tat mHIV-Luciferase T cell gene expression.

Project description:To investigate the cooperative function USF factors for the regulation of T cell transcriptom, we established Jurkat mHIV-Luciferase cells in which USF1 or USF2 was knocked out by CRISPR-Cas9. We then performed gene expression profiling analysis using data obtained from RNA-seq of cell lines either left untreated or stimulated by PMA and Ionomycin co-treatment.

2023-06-29 | GSE227850 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data