Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Gene expression in shoot and root tissues (wild-type, ospipt6-KO)

ABSTRACT: To examine differential effect of the mutation of rice OsPIPT6 on the gene exoression in shoot and root tissues, we performed microarray analysis using shoot and root tissues of wild-type and ospipt6-KO mutant.

ORGANISM(S): Oryza sativa

PROVIDER: GSE210819 | GEO | 2023/08/09

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Gene expression in shoot and root tissues (wild-type, oshho3-KO)

Project description:To examine differential effect of the mutation of rice OsHHO3 on the gene exoression in shoot and root tissues, we performed microarray analysis using shoot and root tissues of wild-type and oshho3-KO mutant.

2024-06-19 | GSE206432 | GEO

Gene expression in shoot and root tissues (wild-type, oshho3-KO)

Project description:Gene expression in shoot and root tissues (wild-type, oshho3-KO)

| PRJNA850788 | ENA

Gene expression in shoot and root tissues (wild-type, ospipt6-KO)

Project description:Gene expression in shoot and root tissues (wild-type, ospipt6-KO)

| PRJNA867669 | ENA

Characterization of Gene Expression in Rice Shoot and Root

Project description:The rice OneArray® 60-mer, oligonucleotide microarray consists of a total of 21,179 probes covering 20,806 genes of japonica and 13,683 genes of indica. Through a validation study, total RNA isolated from rice shoots and roots were used for comparison of gene expression profiles via microarray examination. A list of significantly differentially expressed genes was generated; 438 shoot-specific genes were identified among 3,138 up-regulated genes, and 463 root-specific genes were found among 3,845 down-regulated genes. The Phalanx microarray platform is based upon the hybridization of a single labeled sample (derived from RNA), followed by one-channel detection. The intensity of the hybridization signal is used to determine target concentration. In order to validate the technical quality of each probe in our arrays, we carried out 10 independent hybridizations on samples representing two different rice tissues – root and shoot. To examine the gene expression profiles between rice root and shoot development, total RNA extracted from rice root and shoot were processed on the rice OneArray® microarray following the standard protocol using five arrays for each tissue type. Raw expression data from 10 microarrays (e.g. 5 arrays × 2 tissues) were normalized and Pearson’s correlation coefficients were calculated for the data sets of hybridization signal intensities.

2013-09-14 | E-GEOD-50844 | biostudies-arrayexpress

Transdifferentiation from root to shoot apical meristem

Project description:au10-15_cineroots - transdifferentiation - Study of the molecular mechanism during transdifferenciation from root apical meristem to shoot apical meristem - culture in middle with different hormons, permits transdifferenciation from root to shoot tissues.

2012-02-01 | GSE30515 | GEO

Effect of depletion of OsSPT5-1 on gene expression in shoot and root tissues during vegetative growth

Project description:To explore the molecular mechanisms of shoot and root development mediated by OsSPT5-1, we established osspt5-1#12 mutant line, and then examined the gene expression profiles in vegetative shoot and root tissues of WT and osspt5-1#12.

2022-11-15 | GSE217725 | GEO

Transdifferentiation from root to shoot apical meristem

2012-02-01 | E-GEOD-30515 | biostudies-arrayexpress

Characterization of Gene Expression in Rice Shoot and Root

2013-09-14 | GSE50844 | GEO

Determination of genes expressed in response to drought in root and shoot of Leucaena leucocephala

Project description:Leucaena leucocephala seedlings were treated with PEG6000 and the shoot and root tissues were collected after 48 hours following the treatment. The gene expressions were compared between treated and untreated in root and shoot separately. The differentially expressed genes may be related to drought resistance.

2016-01-13 | GSE76810 | GEO

Transcriptome gene expression analysis of root tip, leaf tip, shoot tip, root (without root tip) and leaf (without leaf tip) from Ceratopteris richardii sporophytes

Project description:To study genes specially expressed in root tip, leaf tip, shoot tip, root (without root tip) and leaf (without leaf tip) of Ceratopteris richardii, we carried out an RNA-seq to analyze gene expression levels from these five tissues.

2019-10-22 | GSE139160 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data