Transcriptomics

Dataset Information

0

RNAseq analysis of Rhodosporidium toruloides BOT-A2 for nitrogen-starvation on glucose or xylose


ABSTRACT: Oleaginous yeasts are capable of accumulating high levels of intracellular storage lipids from excess carbon during times when other key nutrients are limited. The basidiomycete yeast Rhodosporidium toruloides is an emerging host for microbial cell factory applications thanks to its naturally high lipid and carotenoid production. However, the engineering toolbox in this non-model host is limited and is currently a bottleneck for implementation of metabolic engineering strategies. In this study, we performed differential gene expression analysis with the goal to identify promoters that are strongly induced or repressed by nitrogen-limitation, a condition that is commonly used to induce lipid accumulation in oleaginous yeasts. The genome-wide transcriptional response of R. toruloides BOT-A2 was analysed using RNAseq during exponential growth and nitrogen-starvation, with either glucose or xylose as the sole carbon source. To validate the differential gene expression findings, reporter genes were constructed by placing the candidate promoters in control of a fluorescent protein, integrated in BOT-A2 and evaluated in vivo.

ORGANISM(S): Rhodotorula toruloides

PROVIDER: GSE217097 | GEO | 2023/08/23

REPOSITORIES: GEO

Dataset's files

Source:
Action DRS
Other
Items per page:
1 - 1 of 1

Similar Datasets

2023-09-14 | GSE241709 | GEO
2021-09-09 | PXD022377 | Pride
2020-03-02 | GSE128360 | GEO
2012-06-29 | E-GEOD-39023 | biostudies-arrayexpress
2012-06-30 | GSE39023 | GEO
2018-05-31 | GSE113097 | GEO
2023-11-27 | MODEL2204190003 | BioModels
2023-11-27 | MODEL2204190005 | BioModels
2016-05-12 | GSE74307 | GEO
| PRJNA527258 | ENA