Transcriptomics

Dataset Information

0

Identifying Molecular and Functional Similarities and Differences between Adult Human Primary Valve Interstitial Cells and Ventricular Cardiac Fibroblasts


ABSTRACT: Fibroblasts are mesenchymal cells that predominantly produce and maintain the extracellular matrix (ECM) and are critical mediators of injury response. In the heart, valvular interstitial cells (VICs) are a population of fibroblasts responsible for maintaining the structure and function of heart valves. These cells are regionally distinct from myocardial fibroblasts, including left ventricular cardiac fibroblasts (LVCFBs), which are located in the myocardium in close vicinity to cardiomyocytes. Here, we hypothesize these subpopulations of fibroblasts are transcriptionally and functionally distinct. To compare these fibroblast subtypes, we collected patient-matched samples of human primary VICs and LVCFBs and performed bulk RNA sequencing, extracellular matrix profiling, and functional contraction and calcification assays. Here, we identified combined expression of SUSD2 on a protein-level, and MEOX2, EBF2 and RHOU at a transcript-level to be differentially expressed in VICs compared to LVCFBs and demonstrated that expression of these genes can be used to distinguish between the two subpopulations. We found both VICs and LVCFBs expressed similar activation and contraction potential in vitro, but VICs showed an increase in ALP activity when activated and higher expression in matricellular proteins, including cartilage oligomeric protein and alpha 2-Heremans-Schmid glycoprotein, both of which are reported to be linked to calcification, compared to LVCFBs. These comparative transcriptomic, proteomic, and functional studies shed novel insight into the similarities and differences between valvular interstitial cells and left ventricular cardiac fibroblasts and will aid in understanding region-specific cardiac pathologies, distinguishing between primary subpopulations of fibroblasts, and generating region-specific stem-cell derived cardiac fibroblasts.

ORGANISM(S): Homo sapiens

PROVIDER: GSE218251 | GEO | 2023/03/03

REPOSITORIES: GEO

Dataset's files

Source:
Action DRS
Other
Items per page:
1 - 1 of 1

Similar Datasets

2024-01-03 | PXD038117 | Pride
2022-12-26 | GSE221671 | GEO
2022-01-24 | GSE194180 | GEO
2023-12-31 | GSE226781 | GEO
2023-02-01 | GSE223543 | GEO
2020-10-01 | GSE138360 | GEO
2019-01-25 | GSE106118 | GEO
2016-10-25 | GSE89130 | GEO
2013-01-02 | GSE33654 | GEO
2024-10-30 | GSE254500 | GEO