Transcriptomics

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Galectin-1 mediated chronic tumoral-STING activation promotes metastasis 1 through MDSC recruitment


ABSTRACT: To identify the differences in the MDSC population in the tumor verus pre-metastatic niche site, we performed RNA sequencing of isolated CD11b+ Ly6G+ MDSCs and analyzed the differentially expressed genes in PMN-MDSCs isolated from MOC2 tumors and corresponding lung tissues from the same mice To compare the MDSC RNA-level expression with neutrophil expression, a public mouse neutrophil microarray dataset was used (GSE60336). Our MDSC RNA-seq and the public mouse neutrophil data sets were merged using COMBAT55. DEGs for three groups (MDSC lung, MDSC tumor and neutrophil) were calculated using SAM56 multiple class comparison with false discovery rate smaller than 0.05. A total of 5 samples were generated.

ORGANISM(S): Mus musculus

PROVIDER: GSE234636 | GEO | 2023/06/26

REPOSITORIES: GEO

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