Transcriptomics

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Amniotic Fluid Alters Differentiation of Esophageal Epithelial Cells and Amplifies Pro-Allergic Response.


ABSTRACT: Background There is emerging evidence that the risk of inflammatory diseases in childhood such as eosinophilic esophagitis (EoE) is influenced by in-utero events, as prenatal complications increase the risk for the diseases. Objective We propose that the exposure of esophageal epithelium to amniotic fluid (AF) leads to alterations in its differentiation program and responsiveness to pro-allergic stimuli. Methods AF was obtained from the biorepository of the Genomic and Proteomic Network for Preterm Birth Research study. The cytokine/chemokine composition of AF was evaluated by a broad multiplex assay. Western blot was performed to interrogate signaling events following exposure of the esophageal epithelial cells to AF. A 3D spheroid model of esophageal epithelial differentiation was established and analyzed through bulk RNA sequencing and immunofluorescence. Effects of AF on esophageal epithelial differentiation and IL-13 response were assessed by RT-PCR. Results Multiplex analysis of AF revealed an expression of 17 cytokines with an average expression of ~ 70 – 3000 pg/ml. The highest expression was observed for MIP1 and IL1R, whereas IL-3, IL-4, IL-7, and TSLP were not detected. Several pro-inflammatory cytokines including TNF and IL-12 were highly expressed in the AF from women who underwent preterm birth. In contrast, the expression of EGF was the highest in the term birth samples. Exposure of esophageal epithelial cells to AF resulted in transient phosphorylation of ERK1/2 kinase and the transcription of early response genes including EGR1 and EGR2, highlighting the direct impact of AF on esophageal epithelial cells. AF modified the esophageal epithelial differentiation program, as evidenced by alterations in the expression of differentiation markers (ex. CRNN, KRT78, and SLURP1) in the 3D spheroids model. Moreover, AF enhanced the transcriptional response of genes associated with the IL-13 response, including CCL26 and CAPN14. Notably, the upregulation of CAPN14, encoded by the major EoE genetic susceptibility locus, was observed following exposure of epithelial cells to preterm AF samples independently of IL-13. Conclusions Collectively, our findings uncover an interplay between AF components and esophageal epithelial cells, emphasizing the potential relevance of AF in the pathogenesis of esophageal disorders such as EoE.

ORGANISM(S): Homo sapiens

PROVIDER: GSE256022 | GEO | 2024/08/01

REPOSITORIES: GEO

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