Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genomic hybridizations for the parents and progeny of the Toxoplasma gondii I X III genetic cross

ABSTRACT: The parents and progeny of the I X III genetic cross were genotyped using the ToxoGeneChip in order to generate a more detailed genetic map. We also used the genomic hybridization data to look for copy number variations (CNV) and segmental duplications.

ORGANISM(S): Toxoplasma gondii

PROVIDER: GSE26607 | GEO | 2012/01/11

SECONDARY ACCESSION(S): PRJNA142217

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Genomic hybridizations for the parents and progeny of the Toxoplasma gondii I X III genetic cross

Project description:The parents and progeny of the I X III genetic cross were genotyped using the ToxoGeneChip in order to generate a more detailed genetic map. We also used the genomic hybridization data to look for copy number variations (CNV) and segmental duplications. The ToxoGeneChip microarray (http://ancillary.toxodb.org/docs/Array-Tutorial.html) was used to hybridize genomic DNA for the parents and progeny of the I X III cross. The parents of the cross are CTGara and GT1-Fudr. The rest comprise the 34 informative progeny.

2012-01-11 | E-GEOD-26607 | biostudies-arrayexpress

Toxoplasma gondii

Project description:Genomic hybridizations for the parents and progeny of the Toxoplasma gondii I X III genetic cross

| PRJNA142217 | ENA

Toxoplasma gondii

Project description:Expression Quantitative Trait Locus (eQTL) Mapping of Stage-specific Gene Expression in Progeny from a type I X III Genetic Cross of Toxoplasma gondii

| PRJNA142223 | ENA

Canine CNVs associated with canFam2 segmental duplications

Project description:This study centered on using a custom made Nimblegen aCGH chip that targeted all segmental duplications in the canine genome to identify associated CNVs. A total of 19 hybridizations were performed in a panel of diverse dogs and a single wolf. Using computational approaches all segmental duplications were identified in the canFam2 genome of the dog. A custom aCGH chip was then built that densely interrogated these segmental duplications for CNVs in a panel of diverse dog breeds and a single wolf.

2010-05-17 | E-GEOD-13266 | biostudies-arrayexpress

A Burst of Segmental Duplications in the African Great Ape Ancestor

Project description:This SuperSeries is composed of the following subset Series: GSE13884: INTER_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor GSE13885: INTRA_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor Refer to individual Series

2009-03-05 | E-GEOD-13934 | biostudies-arrayexpress

Transcription profiling of Toxoplasma gondii developmental time series

Project description:Asexual development in Toxoplasma gondii is a vital aspect of the parasite's life cycle, allowing transmission and avoidance of the host immune response. Differentiation of rapidly dividing tachyzoites into slowly growing, encysted bradyzoites involves significant changes in both physiology and morphology. We generated microarrays of 4,400 Toxoplasma cDNAs, representing a minimum of 600 genes (based on partial sequencing), and used these microarrays to study changes in transcript levels during tachyzoite-to-bradyzoite differentiation. This approach has allowed us to (i) determine expression profiles of previously described developmentally regulated genes, (ii) identify novel developmentally regulated genes, and (iii) identify distinct classes of genes based on the timing and magnitude of changes in transcript levels. Whereas microarray analysis typically involves comparisons of mRNA levels at different time points, we have developed a method to measure relative transcript abundance between genes at a given time point. This method was used to determine transcript levels in parasites prior to differentiation and to further classify bradyzoite-induced genes, thus allowing a more comprehensive view of changes in gene expression than is provided by standard expression profiles. Newly identified developmentally regulated genes include putative surface proteins (a SAG1-related protein, SRS9, and a mucin-domain containing protein), regulatory and metabolic enzymes (methionine aminopeptidase, oligopeptidase, aminotransferase, and glucose- 6-phosphate dehydrogenase homologues), and a subset of genes encoding secretory organelle proteins (MIC1, ROP1, ROP2, ROP4, GRA1, GRA5, and GRA8). This analysis permits the first in depth look at changes in gene expression during development of this complex protozoan parasite.

2005-07-21 | E-SMDB-1428 | biostudies-arrayexpress

Canine CNVs associated with canFam2 segmental duplications

Project description:Canine CNVs associated with canFam2 segmental duplications

| PRJNA109559 | ENA

Multispecies: human, chimpanzee, gorilla, CHM1, Rhesus macaque

Project description:Transcriptional fates of human-specific segmental duplications

| PRJNA475610 | ENA

Toxoplasma gondii

Project description:Toxoplasma gondii

| PRJDA33425 | ENA

Toxoplasma gondii

Project description:Toxoplasma gondii Raw sequence reads