Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

An RNase III-processed sRNA coordinates sialic acid metabolism of Salmonella enterica during gut colonization

ABSTRACT: To study the biological function of the novel 3′ UTR-derived sRNA, ManS, originating from a S. enterica-specific genomic island, STM1127-STM1131, we conducted RNA-pulse expression combined with RNA sequencing to screen for mRNAs repressed by ManS. Additionally, we compared the transcriptomic changes between wild-type and ManS-deleted strains during N-acetylmannosamine (ManNAc) metabolism.

ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

PROVIDER: GSE269329 | GEO | 2024/11/05

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

An RNase III-processed sRNA coordinates sialic acid metabolism of Salmonella enterica during gut colonization

Project description:An RNase III-processed sRNA coordinates sialic acid metabolism of Salmonella enterica during gut colonization

| PRJNA1121233 | ENA

Methylome of Salmonella enterica subsp. Enterica serovar Javiana str. CFSAN001992 by PacBio SMRT Sequencing

Project description:Single-molecule read technologies allow for detection of epigenomic base modifications during routine sequencing by analysis of kinetic data during the reaction, including the duration between base incorporations at the elongation site (the "inter-pulse duration.") Methylome data associated with a closed de novo bacterial genome of Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992 was produced and submitted to the Gene Expression Omnibus.

2013-03-15 | GSE45178 | GEO

RNase III processed sRNA modulates in vivo colonization of Salmonella enterica through regulation of N-acetylmannosamine metabolism

Project description:To investigate the molecular phenotype for 3’UTR derived sRNA ManS from S.Typhimurium STM1128 mRNA during ManNAc metabolism, we conducted mass spectrometry-based proteomics with both wild-type and ManS-deleted strains to check the differences.

2024-06-05 | PXD052846 |

Effects of an adrA mutant on Salmonella enterica gene expression during root colonization

2015-12-04 | GSE75662 | GEO

Methylome of Salmonella enterica subsp. Enterica serovar Javiana str. CFSAN001992 by PacBio SMRT Sequencing

2013-03-15 | E-GEOD-45178 | biostudies-arrayexpress

Salmonella enterica LT2 microbeMASST submission

Project description:HLB SPE extract from S. enterica LT2 grown in TSB at 37C for 24hr. Media blank is included in supplementary files.

2022-07-31 | MSV000090032 | MassIVE

FabR ChIP-chip on Salmonella enterica subsp. enterica serovar Typhimurium SL1344

Project description:FabR ChIP-chip on Salmonella enterica subsp. enterica serovar Typhimurium SL1344 using anti-Myc antibody against strain with chromosomally 9Myc-tagged FabR (IP samples) and wildtype strain (mock IP samples)

2014-12-31 | GSE52877 | GEO

Effects of an adrA mutant on Salmonella enterica gene expression during root colonization

Project description:Increasing evidence indicates that despite exposure to harsh environmental stresses, Salmonella enterica successfully persists on plants, utilizing fresh produce as a vector to animal hosts. This study examined the mechanisms of S. enterica plant colonization, including the role of the diguanylate cyclase AdrA. Utilizing microarray analysis, we identified a new function for AdrA in the transcriptional regulation of colanic acid biosynthesis genes. Changes in gene expression, comparing wildtype to an adrA mutant, were measured in planktonic bacterial cells after 24-hour incubation with alfalfa seeds. Two independent experiments were performed for each strain (wildtype and the adrA mutant).

2015-12-04 | E-GEOD-75662 | biostudies-arrayexpress

Genomic comparisons of Salmonella enterica sspI strains

Project description:Comparative genomic analysis of the most important S. enterica sspI clinical isolates and respective strains from the SARB collection Keywords: other

2004-05-10 | GSE1035 | GEO

AP-qMS of retron proteins in Salmonella enterica

Project description:We performed affinity purification coupled to quantitative mass spectrometry (AP-qMS) for proteins belonging to retrons of Salmonella enterica. We quantified the proteome of rcaT point mutants in Salmonella enterica. We quantified the proteome of phage P1vir in E. coli.

2022-06-13 | PXD022376 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data