Transcriptomics

Dataset Information

0

Gene Expression Analyses of Subchondral Bone in Early Experimental Osteoarthritis by Microarray


ABSTRACT: Osteoarthritis (OA) is a complex degenerative joint disease, which is not only a cartilage but also a bone disease. A better understanding of the early molecular mechanism changes of subchondral bone in vivo may contribute to elucidating the pathogenesis of OA. We used microarray technology to investigate the time-course molecular changes of subchondral bone just beneath damaged cartilage in early stage of experimental osteoarthritis, and found 2,234 differentially expressed (DE) genes at 1 week, 1,944 at 2 weeks and 1,517 at 4 weeks postsurgery.Further analysis of dysregulated genes indicated that subchondral bone remodeling occurred sequentially and in a time-dependent manner at the gene expression level. Some known dysregulated genes suspected roles in influencing bone development or bone remodeling, such as Alp, Igf1, Tgf β1, Postn, Mmp3, Tnfsf11, Acp5, Bmp5, Aspn and Ihh, were confirmed by real-time PCR, and results indicated that our microarray data could accurately reflect gene expression patterns of early OA. Subsequently, to validate the results of our microarray analysis at protein level, immunohistochemistry staining was introduced to investigate the translational level of genes Mmp3 and Aspn in tissue sections, and results showed that the level of Mmp3 protein expression was totally matched the results of microarray and real-time PCR analysis. Nevertheless, the expression of Aspn protein was not observed differentially expressed at any time point.

ORGANISM(S): Rattus norvegicus

PROVIDER: GSE30322 | GEO | 2012/12/11

SECONDARY ACCESSION(S): PRJNA143609

REPOSITORIES: GEO

Dataset's files

Source:
Action DRS
Other
Items per page:
1 - 1 of 1

Similar Datasets

2012-12-11 | E-GEOD-30322 | biostudies-arrayexpress
2018-03-20 | PXD008494 | Pride
2013-10-24 | E-GEOD-51588 | biostudies-arrayexpress
2017-11-30 | GSE101573 | GEO
2017-11-30 | GSE93008 | GEO
2024-01-31 | GSE253303 | GEO
2022-02-23 | PXD009077 | Pride
2024-03-19 | GSE261528 | GEO
2013-10-24 | GSE51588 | GEO
2020-09-18 | GSE158106 | GEO