Transcriptomics

Dataset Information

0

ABI3 TARGET approach


ABSTRACT: Deciphering gene regulatory networks (GRNs) is a key for understanding gene expression regulations in living systems. Here, we describe the investigation of the ABSCISIC ACID INSENSITIVE 3 (ABI3) plant transcription factor GRN vicinity by a technique called Network Walking. The method involves transient transformation of protoplasts and inducible nuclear re-localization of transcription factors along with transcriptomic analysis. This genome-wide approach allowed the de novo recovery of i) direct and indirect ABI3 target genes, ii) cis-binding site preference, and iii) biological processes regulated by this canonical abscisic acid response factor. This work improves our knowledge of ABI3 action by inferring network motifs (such as Feed Forwar Loops) under its influence. The novel high-throughput-oriented technique will help accelerate GRN systems investigations in plants, as well as in other organisms.

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE33344 | GEO | 2013/01/01

SECONDARY ACCESSION(S): PRJNA148975

REPOSITORIES: GEO

Dataset's files

Source:
Action DRS
Other
Items per page:
1 - 1 of 1

Similar Datasets

2013-01-01 | E-GEOD-33344 | biostudies-arrayexpress
2012-06-01 | GSE33951 | GEO
2012-05-31 | E-GEOD-33951 | biostudies-arrayexpress
2020-05-27 | GSE150558 | GEO
2020-05-27 | GSE150559 | GEO
2014-05-09 | E-GEOD-57457 | biostudies-arrayexpress
2012-05-31 | E-GEOD-34043 | biostudies-arrayexpress
2012-06-01 | GSE34041 | GEO
2012-05-31 | E-GEOD-34041 | biostudies-arrayexpress
2014-05-09 | GSE57457 | GEO