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Comparative analysis of bacterial transcriptome using DNA microarray and next generation sequencing technologies

ABSTRACT: Validation of Lactobacillus plantarum WCFS1 transcriptome profile using RNA sequencing (direct cDNA sequencing and 3'-UTR sequencing) in comparison with DNA microarray as a reference platform.

ORGANISM(S): Lactiplantibacillus plantarum

PROVIDER: GSE35754 | GEO | 2012/07/10

SECONDARY ACCESSION(S): PRJNA152097

REPOSITORIES: GEO

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Comparative analysis of bacterial transcriptome using DNA microarray and next generation sequencing technologies

Project description:Validation of Lactobacillus plantarum WCFS1 transcriptome profile using RNA sequencing (direct cDNA sequencing and 3'-UTR sequencing) in comparison with DNA microarray as a reference platform. Transcriptome analysis was performed on total RNA and enriched mRNA of L. plantarum WCFS1 grown in CDM or MRS media. Samples were hybridized in a loop design, hybridizing each sample twice, once for each dye This Series represents the DNA microarray experiments only.

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