Transcriptomics

Dataset Information

0

Consequences of a deletion in dspA on transcript accumulation in Synechocystis sp. strain PCC6803.


ABSTRACT: Abstract: A sensor histidine kinase of Synechococcus sp. strain PCC7942, designated nblS, was previously identified and shown to be critical for the acclimation of cells to high-light and nutrient limitation conditions and to influence the expression of a number of light-responsive genes. The nblS orthologue in Synechocystis sp. strain PCC6803 is designated dspA (also called hik33). We have generated a dspA null mutant and analyzed global gene expression in both the mutant and wild-type strains under high- and low-light conditions. The mutant is aberrant for the expression of many genes encoding proteins critical for photosynthesis, phosphate and carbon acquisition, and the amelioration of stress conditions. Furthermore, transcripts from a number of genes normally detected only during exposure of wild-type cells to high-light conditions become partially constitutive in the low-light-grown dspA mutant. Other genes for which transcripts decline upon exposure of wild-type cells to high light are already lower in the mutant during growth in low light. These results suggest that DspA may influence gene expression in both a positive and a negative manner and that the dspA mutant behaves as if it were experiencing stress conditions (e.g., high-light exposure) even when maintained at near-optimal growth conditions for wild-type cells. This is discussed with respect to the importance of DspA for regulating the responses of the cell to environmental cues. A strain or line experiment design type assays differences between multiple strains, cultivars, serovars, isolates, lines from organisms of a single species. Keywords: strain_or_line_design

ORGANISM(S): Synechocystis sp. PCC 6803

PROVIDER: GSE4019 | GEO | 2006/01/19

SECONDARY ACCESSION(S): PRJNA95117

REPOSITORIES: GEO

Dataset's files

Source:
Action DRS
Other
Items per page:
1 - 1 of 1

Similar Datasets

2006-01-18 | E-GEOD-4019 | biostudies-arrayexpress
2013-02-06 | GSE42341 | GEO
| PRJNA168444 | ENA
2012-12-31 | GSE39111 | GEO
2013-02-06 | E-GEOD-42341 | biostudies-arrayexpress
2008-05-08 | E-GEOD-11351 | biostudies-arrayexpress
2011-05-20 | GSE21922 | GEO
2012-07-31 | GSE38694 | GEO
2017-12-12 | GSE106824 | GEO
2016-06-01 | GSE76625 | GEO