Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Compendium of deletion mutant gene expression profiles, 700 responsive mutants [hs1991]

ABSTRACT: This dataset consists of 700 responsive mutants (four or more significant mRNA expression changes as a result of the deletion) from a gene expression profile compendium of 1,484 deletion mutants that have a role or are implicated in mRNA transcription regulation, mRNA turnover, signaling or are located in the nucleus.

ORGANISM(S): Saccharomyces cerevisiae

PROVIDER: GSE42527 | GEO | 2014/04/24

SECONDARY ACCESSION(S): PRJNA182221

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Compendium of deletion mutant gene expression profiles, 784 non-responsive mutants [hs1990]

2014-04-24 | GSE42526 | GEO

Transcription profiling by array of 700 responsive mutants out of 1,484 budding yeast deletion mutants

2014-04-24 | E-MTAB-1383 | biostudies-arrayexpress

Compendium of deletion mutant gene expression profiles, 700 responsive mutants [hs1991]

Project description:This dataset consists of 700 responsive mutants (four or more significant mRNA expression changes as a result of the deletion) from a gene expression profile compendium of 1,484 deletion mutants that have a role or are implicated in mRNA transcription regulation, mRNA turnover, signaling or are located in the nucleus. Two channel microarrays were used. RNA isolated from a large amount of wt yeast from a single culture was used as a common reference. This common reference was used in one of the channels for each hybridization and used in the statistical analysis to obtain an average expression-profile for each deletion mutant relative to the wt. Two independent cultures were hybridized on two separate microarrays. For the first hybridization the Cy5 (red) labeled cRNA from the deletion mutant is hybridized together with the Cy3 (green) labeled cRNA from the common reference. For the replicate hybridization, the labels are swapped. Each gene is represented twice on the microarray, resulting in four measurements per mutant. Using the Erlenmeyer growth protocol up to five deletion strains were grown on a single day. In the tecan platereader, up to eleven deletion strains could be grown on a single day. Wt cultures were grown parallel to the deletion mutants to assess day-to-day variance.

2014-04-24 | E-GEOD-42527 | biostudies-arrayexpress

Transcription profiling by array of 784 non-responsive mutants out of 1,484 budding yeast deletion mutants

2014-04-24 | E-MTAB-1384 | biostudies-arrayexpress

Compendium of deletion mutant gene expression profiles, 784 non-responsive mutants [hs1990]

Project description:This dataset consists of 784 non-responsive mutants (three or less significant mRNA expression changes as a result of the deletion) from a gene expression profile compendium of 1,484 deletion mutants that have a role or are implicated in mRNA transcription regulation, mRNA turnover, signaling or are located in the nucleus. Two channel microarrays were used. RNA isolated from a large amount of wt yeast from a single culture was used as a common reference. This common reference was used in one of the channels for each hybridization and used in the statistical analysis to obtain an average expression-profile for each deletion mutant relative to the wt. Two independent cultures were hybridized on two separate microarrays. For the first hybridization the Cy5 (red) labeled cRNA from the deletion mutant is hybridized together with the Cy3 (green) labeled cRNA from the common reference. For the replicate hybridization, the labels are swapped. Each gene is represented twice on the microarray, resulting in four measurements per mutant. Using the Erlenmeyer growth protocol up to five deletion strains were grown on a single day. In the tecan platereader, up to eleven deletion strains could be grown on a single day. Wt cultures were grown parallel to the deletion mutants to assess day-to-day variance.

2014-04-24 | E-GEOD-42526 | biostudies-arrayexpress

Saccharomyces cerevisiae

Project description:Compendium of deletion mutant gene expression profiles, 700 responsive mutants [hs1991]

| PRJNA182221 | ENA

Proteome compendium of the Antarctic krill (Euphausia superba) - Muscle

Project description:The Antarctic krill provides central ecosystems services to the Southern Ocean grazing on autotroph and heterotoph diet and constituting the dominant food source for higher trophic levels. Moreover, E. superba's extensive equipment with biomacromolecule hydrolysing enzymes represents a largely untapped resource for applied purposes. The proteome compendium of krill provides a valuable basis for future studies on krill biology (e.g., metabolism, development, migration behaviour), for krill's contribution to organic matter turnover in the Southern Ocean, as well as for multilevel biotechnological prospecting.

2022-09-28 | PXD033601 | Pride

Proteome compendium of the Antarctic krill (Euphausia superba) - Telson

2022-09-28 | PXD033775 | Pride

Proteome compendium of the Antarctic krill (Euphausia superba) - Carapace

2022-09-28 | PXD033594 | Pride

Proteome compendium of the Antarctic krill (Euphausia superba) - Head

2022-09-28 | PXD033597 | Pride