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Transcriptomic comparison of tumoric tissues induced by different c58 agrobacterium lines; Quorum-sensing in Agrobacterium-induced tumors

ABSTRACT: rs11-03_agro transcriptomic comparison of tumoric tissues induced by different c58 agrobacterium lines What are the functions and the regulatory pathways of the bacterial quorum-sensing system in the context of Agrobacterium/Arabidopsis interactions?

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE48402 | GEO | 2013/09/01

SECONDARY ACCESSION(S): PRJNA210138

REPOSITORIES: GEO

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Transcriptomic comparison of tumoric tissues induced by different c58 agrobacterium lines; Quorum-sensing in Agrobacterium-induced tumors

Project description:rs11-03_agro transcriptomic comparison of tumoric tissues induced by different c58 agrobacterium lines What are the functions and the regulatory pathways of the bacterial quorum-sensing system in the context of Agrobacterium/Arabidopsis interactions? Arabidopsis WT Col0 plants were grown in greenhouse till stage 1.03-1.04 (growth conditions 1). They were then confined in short day conditions and at 22Â°C (growth conditions 2). At stage 5.10 plants were wounded at the base of the stem and part of them were inoculated with 3 different C58 Agrobacterium strains (WT, accR or traI). Eighteen days post inoculation, wounded but non-infected tissues (control) as well as tumoric tissues were collected and processed for RNA extraction. 21 dye-swap

2013-09-01 | E-GEOD-48402 | biostudies-arrayexpress

Agrobacterium tumefaciens C58 whole-genome tiling microarray design and validation

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2014-10-28 | GSE62750 | GEO

Arabidopsis thaliana Col-0 leaf transcriptome response to Agrobacterium tumefaciens C58

Project description:As sessile organisms, plants require dynamic pathways in order to recognize pathogens and coordinate plant defenses by signalling. Agrobacterium tumefaciens C58 is able to avoid triggering plant defenses prior to entering the cell, and therefore is only detected once infection has begun making Agrobacterium a plant pathogen to numerous plant species. Understanding plant responses to Agrobacterium will be useful in improving plant defenses and potentially may also improve plant transformation efficiency. Microarrays were utilized for detailing the global gene expression pattern in A. thaliana Col-0 leafs in response to A. tumefaciens C58 for the identification of differentially expressed genes.

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Arabidopsis thaliana Col-0 leaf transcriptome response to Agrobacterium tumefaciens C58

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Arabidopsis thaliana Col-0 root transcriptome response to Agrobacterium tumefaciens C58

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Comparative genomic hybridization of Agrobacterium tumefaciens strains on tiling arrays covering the genome of strain C58

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