Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Epigenome signatures during gastric carcinogenesis based on next generation sequencing analysis [Bisulfite-Seq]

ABSTRACT: Because gastric cancer cells already had genetic and epigenetic alterations which can affect the gastric carcinogenesis, we tried to characterize genetic and epigenetic changes during gastric carcinogenesis. To do this, we performed MBD sequencing and RRBS sequencing.

ORGANISM(S): Homo sapiens

PROVIDER: GSE55159 | GEO | 2015/09/01

SECONDARY ACCESSION(S): PRJNA238873

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Epigenome signatures during gastric carcinogenesis based on next generation sequencing analysis [Bisulfite-Seq]

Project description:Because gastric cancer cells already had genetic and epigenetic alterations which can affect the gastric carcinogenesis, we tried to characterize genetic and epigenetic changes during gastric carcinogenesis. To do this, we performed MBD sequencing and RRBS sequencing. MBD and RRBS sequencing of gastric mucosa, intestinal metaplasia, and gastric cancer cells from one patient were generated by NGS using Illumina GAII.

2015-09-01 | E-GEOD-55159 | biostudies-arrayexpress

Epigenome signatures during gastric carcinogenesis based on next generation sequencing analysis [MBD-Seq]

2015-09-01 | E-GEOD-55157 | biostudies-arrayexpress

Epigenome signatures during gastric carcinogenesis based on next generation sequencing analysis [MBD-Seq]

2015-09-01 | GSE55157 | GEO

Epigenome signatures during gastric carcinogenesis based on next generation sequencing [Affymetrix]

2017-09-01 | GSE55153 | GEO

The self-renewal of gastric cancer stem cells is regulated by a specific collaboration between the microenvironment and the genetic condition.

Project description:Because cancer stem cells already had genetic and epigenetic alterations which can affect the self-renewal, we tried to characterize genetic and epigenetic changes of the gastric cancer stem cells. To do this, we performed SNP array, MBD sequencing and RNA sequencing.

2016-12-31 | GSE46594 | GEO

Epigenome profiling in gastric carcinogenesis by whole genome bisulfite sequencing

Project description:In this study, GC-specific DNA methylation profiling was investigated in nine fresh frozen tissues which included non-tumor, intestinal metaplasia, and gastric tumor using whole genome bisulfite sequencing to deeply understanding epigenome change during gastric carcinogenesis

2023-01-04 | GSE166154 | GEO

Epigenome profiling in gastric carcinogenesis by whole genome bisulfite sequencing

Project description:Epigenome profiling in gastric carcinogenesis by whole genome bisulfite sequencing

| PRJNA699476 | ENA

Epigenome signatures during gastric carcinogenesis based on next generation sequencing

Project description:Epigenome signatures during gastric carcinogenesis based on next generation sequencing

| PRJNA238870 | ENA

Integrated epigenomic analyses of enhancer as well as promoter regions in gastric cancer

Project description:To understand epigenetic changes in the distal regulatory as well as proximal regions, we performed RNA-seq, MBD-seq, and H3K27ac ChIP-seq on gastric tissues and cell lines MBD sequencing of normal tissue (n), purified gastric cancer (sc), and cultured gastric cancer cell (dc) were generated by deep sequencing, in five samples from three patients (csc1, csc2, csc3) and two replicates (csc1_sc2, csc1_sc3), using Illumina GAIIx.

2016-03-28 | E-GEOD-46595 | biostudies-arrayexpress

Epigenetic reprogramming in hepatic carcinogenesis

Project description:Epigenetic reprogramming in hepatic carcinogenesis

| PRJNA450821 | ENA