Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Global transcriptional profile of Salmonella enterica serovar Cerro 87 wild-type and its dpt genes deletion mutants at different growth state

ABSTRACT: To explore the molecular mechanism of the DNA phosphorothioate modification-dependent restriction system, the transcriptomes of Salmonella enterica serovar Cerro 87 wild-type and its modification or restriction genes deletion mutants were compared by microarray analysis.

ORGANISM(S): Salmonella enterica Salmonella enterica subsp. enterica serovar Cerro

PROVIDER: GSE59225 | GEO | 2014/07/09

SECONDARY ACCESSION(S): PRJNA254759

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Global transcriptional profile of Salmonella enterica serovar Cerro 87 wild-type and its dpt genes deletion mutants at different growth state

Project description:To explore the molecular mechanism of the DNA phosphorothioate modification-dependent restriction system, the transcriptomes of Salmonella enterica serovar Cerro 87 wild-type and its modification or restriction genes deletion mutants were compared by microarray analysis. Global gene expression in three strains, Salmonella enterica serovar Cerro 87 wild-type and its modification or restriction genes deletion mutants, were measured at three different growth state, respectively. Three independent experiments were performed at each condition.

2014-07-09 | E-GEOD-59225 | biostudies-arrayexpress

PT-modified B12 probe and Non-PT-modified B34 probe pull-down with Salmonella enterica serovar Cerro 87 cell lysate

Project description:To capture proteins that exhibit differential binding with PT- and non-PT-modified DNA in vivo, we performed pull-down assays using biotinylated DNA probes and the cell lysate of S. enterica serovar Cerro 87 that contains the dndBCDE-dndFGH module. For these experiments, we used two 30 bp DNA probes, B12 and B34, which share the same DNA sequences but possess PT-modified 5’-GPSAAC-3’/5’-GPSTTC-3’ and non-PT-modified 5’-GAAC-3’/5’-GTTC-3’ motifs, respectively.

2022-02-26 | PXD031869 | Pride

FabR ChIP-chip on Salmonella enterica subsp. enterica serovar Typhimurium SL1344

Project description:FabR ChIP-chip on Salmonella enterica subsp. enterica serovar Typhimurium SL1344 using anti-Myc antibody against strain with chromosomally 9Myc-tagged FabR (IP samples) and wildtype strain (mock IP samples)

2014-12-31 | GSE52877 | GEO

Genomic comparisons of Salmonella enterica serovar Enteritidis isolates

Project description:Comparative genomic hybridization of a temporally and locally diverse set of S. enterica ssp I serovar Enteritidis isolates, and some closely related serovar Dublin and Gallinarum strains, to the sequenced Enteritidis PT4 Keywords: other

2005-08-06 | GSE2242 | GEO

Expression analysis of Salmonella enterica serovar Typhimurium 14028 delta GidA mutant

Project description:Investigation of whole genome gene expression level changes in a Salmonella enterica serovar Typhimurium 14028 delta GidA mutant The mutant described in this study is further analyzed in Shippy, D. C., N. M. Eakley, P. N. Bochsler, and A. A. Fadl. 2011. Biological and virulence characteristics of Salmonella enterica serovar Typhimurium following deletion of glucose-inhibited division (gidA) gene. Microb Pathog.

2011-07-20 | GSE30787 | GEO

Salmonella enterica subsp. enterica serovar Cerro strain:87

Project description:Salmonella enterica serovar Cerro 87 Genome sequencing

| PRJNA252640 | ENA

Salmonella enterica subsp. enterica serovar Cerro strain:87

Project description:Salmonella enterica subsp. enterica serovar Cerro strain: 87 Genome sequencing

| PRJNA263759 | ENA

Expression analysis of Salmonella enterica serovar Typhimurium UK1 delta-iacP mutant

Project description:Investigation of whole genome gene expression level changes in a Salmonella enterica serovar Typhimurium UK1 delta-iacP mutant, compared to the wild-type strain. IacP is resoponsible for the secretion of virulence effector proteins via the type III secretion system, thereby contributing the virulence of S. Typhimurium. The mutants analyzed in this study are further described in Kim et al. 2011. Role of Salmonella Pathogenicity Island 1 Protein IacP in Salmonella enterica Serovar Typhimurium Pathogenesis. Infection and Immunity 79(4):1440-1450 (PMID 21263021).

2012-04-30 | GSE34663 | GEO

Methylome of Salmonella enterica subsp. Enterica serovar Javiana str. CFSAN001992 by PacBio SMRT Sequencing

Project description:Single-molecule read technologies allow for detection of epigenomic base modifications during routine sequencing by analysis of kinetic data during the reaction, including the duration between base incorporations at the elongation site (the "inter-pulse duration.") Methylome data associated with a closed de novo bacterial genome of Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992 was produced and submitted to the Gene Expression Omnibus. Single-sample sequencing and base modification detection of cultured isolate of a foodborne pathogen.

2013-03-15 | E-GEOD-45178 | biostudies-arrayexpress