Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

V. vinifera 'Cabernet sauvignon' and V. aestivalis 'Norton' innoculated with Erysiphe necator conidiospores

ABSTRACT: we analyzed pathogen-induced changes in the transcriptome of Vitis vinifera ‘Cabernet sauvignon’ and Vitis aestivalis ‘Norton’ by conducting a large-scale study to measure transcript abundance at 0, 4, 8, 12, 24, and 48 hours post-treatment in conidiospore- and mock-inoculated leaves using Affymetrix GeneChip Vitis vinifera Genome Array Keywords: time course

ORGANISM(S): Vitis vinifera Vitis aestivalis

PROVIDER: GSE6404 | GEO | 2007/11/29

SECONDARY ACCESSION(S): PRJNA99537

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Transcription profiling of V. vinifera Cabernet sauvignon and V. aestivalis Norton innoculated with Erysiphe necator conidiospores

Project description:we analyzed pathogen-induced changes in the transcriptome of Vitis vinifera âCabernet sauvignonâ and Vitis aestivalis âNortonâ by conducting a large-scale study to measure transcript abundance at 0, 4, 8, 12, 24, and 48 hours post-treatment in conidiospore- and mock-inoculated leaves using Affymetrix GeneChip Vitis vinifera Genome Array Experiment Overall Design: sixty plants were grown in each of two identical growth chamber labeled as Inoculation and Mock-inoculation under same conditions. Pairs of vines of same size were labeled, one with an âIâ, the other with a âMâ prefix for âinoculatedâ and âmockâ. The vines in each pair received the same ID number. This resulted in balanced groups for inoculated and mock-inoculated vines. âIâ and âMâ vines of a pair were placed in corresponding locations on the bench of the two growth chambers. The locations of the vines were determined by randomizing their ID numbers. Thus, the âIâ and âMâ groups were balanced according to their size and to their locations within the growth chamber. All vines were positioned at the same height from the light source. The locations of the individual plants within the growth chamber were recorded. At a time point, 10 randomly selected pairs of plants were sampled. (For example, at 8 hours post-inoculation, vines I-3, I-17, I -23, ..etc., and vines M-3, M-17, M-23, ...etc. were sampled from the âIâ and the âMâ growth chambers, respectively). The 10 corresponding leaves were combined into a single sample. At the next time point, another set of randomly selected 10 pairs were sampled from among the remaining plants, and so on. This random selection was independent from the random selection implemented to determine the location of the vines in the growth chambers

2008-06-14 | E-GEOD-6404 | biostudies-arrayexpress

Vitis vinifera cultivar:Cabernet Sauvignon

Project description:Vitis vinifera cultivar:Cabernet Sauvignon Raw sequence reads

| PRJNA999922 | ENA

Vitis vinifera cultivar:Cabernet Sauvignon

Project description:Vitis vinifera cultivar:Cabernet Sauvignon Raw sequence reads

| PRJNA316730 | ENA

Vitis vinifera cultivar:Cabernet Sauvignon

Project description:Vitis vinifera cultivar:Cabernet Sauvignon Raw sequence reads

| PRJNA890029 | ENA

Vitis vinifera strain:Cabernet sauvignon

Project description:Vitis vinifera strain:Cabernet sauvignon Transcriptome or Gene expression

| PRJNA227009 | ENA

Vitis vinifera cultivar:Cabernet Sauvignon

Project description:Vitis vinifera bud (Cabernet Sauvignon) RNA sequencing (Transcriptome study)

| PRJNA954365 | ENA

Vitis vinifera isolate:latent bud | cultivar:Cabernet Sauvignon

Project description:Vitis vinifera isolate:latent bud | cultivar:Cabernet Sauvignon Raw sequence reads

| PRJNA350390 | ENA

Vitis vinifera cultivar:Cabernet Franc, Cabernet Sauvignon, Chardonnay, Merlot, Pinot Noir, Sauvignon Blanc, and Semillon

Project description:Vitis vinifera cultivar:Cabernet Franc, Cabernet Sauvignon, Chardonnay, Merlot, Pinot Noir, Sauvignon Blanc, and Semillon Transcriptome or Gene expression

| PRJNA260535 | ENA

V. vinifera 'Cabernet sauvignon' and V. aestivalis 'Norton' innoculated with Erysiphe necator conidiospores

Project description:V. vinifera 'Cabernet sauvignon' and V. aestivalis 'Norton' innoculated with Erysiphe necator conidiospores

| PRJNA99537 | ENA

Grape skin transcriptome to reveal genes related with resveratrol accumulation

Project description:Methods:transcriptomes of the different development stages of Vitis vinifera cv. Cabernet Sauvignon and Vitis quinquangularis accession Danfeng-2 were analyzed using Illumina Hiseq 2500. The sequence reads that passed quality filters were analyzed: TopHat followed by Cufflinks. mRNA profiles of different development stages of Vitis vinifera cv. Cabernet Sauvignon and Vitis quinquangularis accession Danfeng-2 were generated by deep sequencing, in triplicate, using Illumina Hiseq 2500.

2015-12-23 | E-GEOD-76256 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data