Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Streptococcus mutans UA159 vs. fabM mutant strain (UR117), pH7 vs. pH5/5.5

ABSTRACT: Transcriptional analysis of glucose shock vs. steady-state growth in the parent strain and an acid sensitive mutant strain of S. mutans

ORGANISM(S): Streptococcus mutans UA159 Streptococcus mutans

PROVIDER: GSE64236 | GEO | 2015/02/15

SECONDARY ACCESSION(S): PRJNA270504

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Streptococcus mutans UA159 vs. fabT mutant strain, pH5 vs. pH7

Project description:Transcriptional analysis of the regulator FabT in S. mutans

2012-06-01 | GSE36960 | GEO

Streptococcus mutans UA159 vs. fabM mutant strain (UR117), pH7 vs. pH5/5.5

Project description:Transcriptional analysis of glucose shock vs. steady-state growth in the parent strain and an acid sensitive mutant strain of S. mutans RNA was extracted from 4 replicate samples of S. mutans UA159 and UR117 (fabM mutant strain) grown in continuous culture to a steady-state pH value of 7. The cultures were exposed to a glucose shock (200mM) and samples were collected upon achieving culture pH value of 5.5. pH control was re-established and cultures were allowed to grow to a steady-state pH value of 5 (for UA159) and 5.5 (for fabM mutant). RNA was labeled with Cy3. For each replicate, labeled RNA was hybridized to slides along with Cy5-labeled reference RNA, extracted from S. mutans UA159 cultures grown to mid-log.

2015-02-15 | E-GEOD-64236 | biostudies-arrayexpress

Streptococcus mutans UA159 vs. fabT mutant strain, pH5 vs. pH7

Project description:Transcriptional analysis of the regulator FabT in S. mutans RNA was extracted from 4 replicate samples of S. mutans UA159 and MU1591 (M-bM-^HM-^FfabT) grown in continuous culture to steady-state pH values of 7 and 5. RNA was labeled with Cy3. For each replicate, labeled RNA was hybridized to slides along with Cy5-labeled reference RNA, extracted from S. mutans UA159 cultures grown to mid-log.

2012-05-31 | E-GEOD-36960 | biostudies-arrayexpress

Streptococcus mutans UA159 with or without 8.4% oxygen vs. nox mutant strain. pH5

Project description:Transcriptional analysis of the effects of oxygen concentraion in S. mutans

2014-04-01 | GSE56118 | GEO

Streptococcus mutans UA159 with or without 8.4% oxygen vs. nox mutant strain. pH7

Project description:Transcriptional analysis of the effects of oxygen concentraion in S. mutans

2012-10-04 | GSE38803 | GEO

Streptococcus mutans UA159 grown in the presence of glucose or maltose pH7 and pH5

Project description:Transcriptional analysis of the effects of sugar source in S. mutans

2014-06-01 | GSE55952 | GEO

Streptococcus mutans UA159 grown in the presence of glucose or maltose pH7 and pH5

Project description:Transcriptional analysis of the effects of sugar source in S. mutans RNA was extracted from 4 replicate samples of S. mutans UA159, UA159 grown in glucose or maltose in continuous culture to steady-state pH values of 7 or 5. RNA was labeled with Cy3. For each replicate, labeled RNA was hybridized to slides along with Cy5-labeled reference RNA, extracted from S. mutans UA159 cultures grown to mid-log.

2014-06-01 | E-GEOD-55952 | biostudies-arrayexpress

Streptococcus mutans UA159 with or without 8.4% oxygen vs. nox mutant strain. pH5

Project description:Transcriptional analysis of the effects of oxygen concentraion in S. mutans RNA was extracted from 3 or 4 replicate samples of S. mutans UA159, UA159 grown in 8.4 % oxygen concentration and MU1020 (M-bM-^HM-^Fnox) grown in continuous culture to steady-state pH values of 5. RNA was labeled with Cy3. For each replicate, labeled RNA was hybridized to slides along with Cy5-labeled reference RNA, extracted from S. mutans UA159 cultures grown to mid-log.

2014-04-01 | E-GEOD-56118 | biostudies-arrayexpress

Streptococcus mutans UA159 with or without 8.4% oxygen vs. nox mutant strain. pH7

Project description:Transcriptional analysis of the effects of oxygen concentraion in S. mutans RNA was extracted from 3 or 4 replicate samples of S. mutans UA159, UA159 grown in 8.4 % oxygen concentration and MU1020 (M-bM-^HM-^Fnox) grown in continuous culture to steady-state pH values of 7. RNA was labeled with Cy3. For each replicate, labeled RNA was hybridized to slides along with Cy5-labeled reference RNA, extracted from S. mutans UA159 cultures grown to mid-log.

2012-10-04 | E-GEOD-38803 | biostudies-arrayexpress

Streptococcus mutans UA159 vs. clp mutant strains

Project description:Transcriptional profiling to investigate the roles of ClpP and ClpX of S. mutans RNA was extracted from four replicate samples of each strain of interest and labeled with Cy3. For each replicate, labeled RNA was hybridized to slides along with Cy5-labeled reference RNA, extracted from S. mutans UA159 cells grown to mid-log.

2011-06-10 | E-GEOD-29871 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data