Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Nas1 KO mice versus WT mice total kidney comparison

ABSTRACT: Pairwise comparison of total kidney RNA extracted from Nas1 knockout mice versus total kidney RNA extracted from wildtype mice Keywords: Direct pairwise comparison

ORGANISM(S): Mus musculus

PROVIDER: GSE6849 | GEO | 2008/01/24

SECONDARY ACCESSION(S): PRJNA99089

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Nas1 KO mice versus WT mice total kidney comparison

Project description:Pairwise comparison of total kidney RNA extracted from Nas1 knockout mice versus total kidney RNA extracted from wildtype mice Pairwise comparison containing a dye swap to eliminate dye bias

2010-06-29 | E-GEOD-6849 | biostudies-arrayexpress

E15.5 renal macrophage vs E15.5 total kidney

Project description:Direct comparison of FACS sorted EGFP positive renal macrophages vs pooled Total Kidney extract Keywords: Direct pairwise comparison

2007-07-04 | GSE6261 | GEO

Total Lung Control vs Lung Macrophage

Project description:Direct comparison of FACS sorted EGFP positive Lung macrophages vs pooled Total Lung extract Keywords: Direct pairwise comparison

2007-07-04 | GSE6266 | GEO

Total Brain Control vs Brain Macrophage

Project description:Direct comparison of FACS sorted EGFP positive brain macrophages vs pooled Total Brain extract Keywords: Direct pairwise comparison

2007-07-04 | GSE6265 | GEO

Total and MicroRNA from transgenic mice

Project description:Total and MicroRNA from transgenic mice

| PRJNA329140 | ENA

Mus musculus

Project description:Nas1 KO mice versus WT mice total kidney comparison

| PRJNA99089 | ENA

Renal transcriptome profiling by RNAseq in Bicc1 WT and KO mice.

Project description:Mutations in Bicaudaul C 1 (BICC1), evolutionary conserved RNA-binding protein, cause renal cysts in mice and humans. These renal cysts are reminiscent of Polycystic Kidney Disease (PKD). How BICC1 is involved in the pathogenesis of polycystic kidney disease is still unknown. Recent studies highlighted that HNF4A plays a role in the regulation of metabolic pathways deregulated in this renal disease. Moreover, Menezes et al. [2012, https://doi.org/10.1371/journal.pgen.1003053] showed that combined kidney inactivation of Hnf4a and Pkd1 in mice significantly worsened the cystic phenotype. Here we investigated whether the DNA binding and transcriptional activity of HNF4A might be deregulated in kidneys from Bicc1 mouse model of polycystic kidney disease. HNF4A, H3K27ac, H3K4me1 ChIPseq experiments were performed in kidneys from male and female Bicc1 WT and KO mice. From the contralateral kidneys of the same animals used for the ChIPseq experiments, the total RNA was extracted for gene expression profiling by RNAseq. The RNAseq data was used to support the ChIP-seq analysis and to reveal deregulated pathways in BICC1 mutants.

2020-01-20 | E-MTAB-6423 | biostudies-arrayexpress

Heart, skeletal muscle, and kidney total RNA sequencing in adult and aging mice

Project description:Heart, skeletal muscle, and kidney total RNA sequencing in adult and aging mice

| PRJNA734036 | ENA

Mouse P0 cerebellum: Smarca5 conditional KO mice (cKO) versus wild type controls

Project description:Gene expression profiling of mouse cerebellum in which the experimental strain conditionally lack the Smarca5 gene that encodes for the catalytic subunit of multiple chromatin remodeling complexes. Deletion of Smarca5 was restricted to those cells expressing Cre-recombinase driven by the Nestin promoter. Comparison of gene expression in P0 cerebella of Smarca5 cKO mice versus wild type controls. Three samples of each strain were used in a total of 4 replicates.

2014-04-30 | E-GEOD-42369 | biostudies-arrayexpress

Mouse P10 cerebellum: Smarca5 conditional KO mice (cKO) versus wild type controls

Project description:Gene expression profiling of mouse cerebellum in which the experimental strain conditionally lack the Smarca5 gene that encodes for the catalytic subunit of multiple chromatin remodeling complexes. Deletion of Smarca5 was restricted to those cells expressing Cre-recombinase driven by the Nestin promoter. Comparison of gene expression in P10 cerebella of Smarca5 cKO mice versus wild type controls. Three samples of each strain were used in a total of 3 replicates.

2014-04-30 | E-GEOD-42370 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data