Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

CaArray_socci-00214: TCGA Analysis of Copy Number for OV Using Agilent Human Genome CGH Microarray Kit 244K

ABSTRACT: TCGA Analysis of Copy Number for OV Using Agilent Human Genome CGH Microarray Kit 244K

ORGANISM(S): Homo sapiens

PROVIDER: GSE90928 | GEO | 2016/12/07

SECONDARY ACCESSION(S): PRJNA356382

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

caArray_EXP-576: TCGA (LUAD): Gene Expression Analysis of TCGA samples using Agilent Expression 244K microarrays (UNC)

Project description:Gene Expression Analysis of TCGA samples using Agilent Expression 244K microarrays.

2015-05-13 | GSE68787 | GEO

caArray_EXP-574: TCGA(Kirc): Gene Expression Analysis of TCGA samples using Agilent Expression 244K microarrays (UNC)

Project description:Gene Expression Analysis of TCGA samples using Agilent Expression 244K microarrays.

2015-05-13 | GSE68784 | GEO

caArray_EXP-576: TCGA (LUAD): Gene Expression Analysis of TCGA samples using Agilent Expression 244K microarrays (UNC)

Project description:Gene Expression Analysis of TCGA samples using Agilent Expression 244K microarrays. EXP-576 Assay Type: Gene Expression Provider: Agilent Array Designs: AgilentG4502A_07_3 Organism: Homo sapiens (ncbitax) Tissue Sites: Lung Material Types: Control Analyte, organism_part, Primary solid_tumor, genomic_DNA Disease States: Lung Adenocarcinoma, NOT SPECIFIED

2015-05-13 | E-GEOD-68787 | biostudies-arrayexpress

caArray_EXP-574: TCGA(Kirc): Gene Expression Analysis of TCGA samples using Agilent Expression 244K microarrays (UNC)

Project description:Gene Expression Analysis of TCGA samples using Agilent Expression 244K microarrays. EXP-574 Assay Type: Gene Expression Provider: Agilent Array Designs: AgilentG4502A_07_3 Organism: Homo sapiens (ncbitax) Tissue Sites: Kidney Material Types: Control Analyte, organism_part, Primary solid_tumor, genomic_DNA Disease States: Kidney Clear Cell Renal Carcinoma, NOT SPECIFIED

2015-05-13 | E-GEOD-68784 | biostudies-arrayexpress

Agilent 244K CGH data for esophageal squamous cell carcinoma (ESCC)

Project description:Copy number analysis of primary esophageal squamous cell carcinoma (ESCC) from 40 patients in Japan. Integrative analysis of gene expression profiles and genomic alterations obtained from array-CGH and NGS provided us new insight into the pathogenesis of ESCC. 40 tumor samples were prepared for aCGH analysis. For genome profiling, labeling and hybridization of genomic DNA onto the Agilent-014693 Human Genome Microarray Kit 244K (Agilent Technologies) was performed according to the manufacturer's instructions.

2013-09-01 | E-GEOD-47630 | biostudies-arrayexpress

Agilent 244K CGH data for esophageal squamous cell carcinoma (ESCC)

2013-09-01 | GSE47630 | GEO

Homo sapiens

Project description:caArray_socci-00214: TCGA Analysis of Copy Number for OV Using Agilent Human Genome CGH Microarray Kit 244K

| PRJNA356382 | ENA

Agilent 244K aCGH data for 10 human gastric cancers

Project description:Copy number alteration (CNA) is a good signpost to identify cancer related genes. CNAs were analyzed using the Agilent 244K array comparative genomic hybridization (aCGH) in fresh-frozen tumor and matched normal tissues from 10 gastric cancer patients.

2015-05-29 | GSE69318 | GEO

Agilent custom 244K array CGH data for the HuRef individual

Project description:The ideal genome sequence for medical interpretation is complete and diploid, capturing the full spectrum of genetic variation. Toward this end, there has been progress in discovery of single nucleotide polymorphism (SNP) and small (<10bp) insertion/deletions (indels), but annotation of larger structural variation (SV) including copy number variation (CNV) has been less comprehensive, even with available diploid sequence assemblies. We applied a multi-step sequence and microarray-based analysis to identify numerous previously unknown SVs within the first genome sequence reported from an individual. CGH experiments were performed with genomic DNA extracted from the HuRef and six HapMap lymphoblastoid cell lines, hybridized against the reference NA10851. A dye-swap experiment was performed for each experiment. The custom CGH microarray contains probes that target novel sequences that are not on the NCBI reference build 35. Instead, the probes target scaffold sequences that are unique to the Celera R27C assembly.

2013-02-12 | E-GEOD-20287 | biostudies-arrayexpress

caArray_topal-00039: TCGA (GBM): MicroRNA Analysis of TCGA GBM samples using Agilent MicroRNA array (UNC)

Project description:MicroRNA Analysis of TCGA GBM samples using Agilent MicroRNA array

2016-12-09 | GSE91014 | GEO