RNA validation of LAB 2k v2

ABSTRACT: To study their metabolic potential in natural ecosystems, we developed a species-independent LAB microarray, containing 2,269 30-mer oligonucleotides, and targeting 406 genes that play a key role in the production of sugar catabolites, bacteriocins, exopolysaccharides, and aromas, in probiotic and biosafety characteristics, and in stress response. Also, genes linked to negative traits such as antibiotic resistance and virulence are represented. This experiment is a validation experiment, where we hybridized labelled RNA from 20 LAB strains, covering 86% of all oligos. Keywords: Platform validation experiment

ORGANISM(S): Lacticaseibacillus casei Companilactobacillus farciminis Limosilactobacillus panis Weissella confusa Lactobacillus helveticus Latilactobacillus curvatus Lentilactobacillus hilgardii Enterococcus mundtii Lactococcus lactis Lentilactobacillus buchneri Streptococcus thermophilus Brevibacterium linens Lactobacillus gasseri Pediococcus pentosaceus Limosilactobacillus pontis Lactobacillus crispatus Fructilactobacillus sanfranciscensis Lactobacillus acidophilus Latilactobacillus sakei Companilactobacillus alimentarius Lactiplantibacillus pentosus Enterococcus faecium Lactobacillus delbrueckii Bifidobacterium Lacticaseibacillus paracasei Oenococcus oeni Fructilactobacillus fructivorans Lentilactobacillus parabuchneri Companilactobacillus mindensis Leuconostoc mesenteroides Pediococcus acidilactici Companilactobacillus paralimentarius Lactiplantibacillus plantarum Lacticaseibacillus rhamnosus Furfurilactobacillus rossiae Limosilactobacillus fermentum Enterococcus faecalis Leuconostoc pseudomesenteroides Mammaliicoccus lentus Enterococcus casseliflavus Leuconostoc citreum Lactiplantibacillus paraplantarum Lactobacillus johnsonii Lactobacillus amylovorus Staphylococcus aureus Enterococcus hirae Limosilactobacillus reuteri Limosilactobacillus frumenti Levilactobacillus brevis

PROVIDER: GSE9140 | GEO | 2009/10/20

SECONDARY ACCESSION(S): PRJNA102683

REPOSITORIES: GEO