Transcriptomics

Dataset Information

0

A tissue-mapped axolotl de novo transcriptome enables identification of limb regeneration factors


ABSTRACT: Discovery of genes driving axolotl limb regeneration has been challenging due to limited genomic resources. We assembled 42 RNA-Seq samples totaling approximately 1.3 billion 100 base paired-end reads using Trinity (Grabherr M.G. et al, Nature Biotechnology, 2011; Haas B.J. et al, Nature Protocols, 2013): https://github.com/trinityrnaseq/trinityrnaseq/wiki). We created a transcriptome with complete sequence information for most axolotl genes, identified transcriptional profiles that distinguish blastemas from differentiated limb tissues, and uncovered functional roles for cirbp and kazald1 in limb regeneration.

ORGANISM(S): Ambystoma mexicanum

PROVIDER: GSE92429 | GEO | 2016/12/15

REPOSITORIES: GEO

Dataset's files

Source:
Action DRS
Other
Items per page:
1 - 1 of 1

Similar Datasets

2023-09-20 | GSE243225 | GEO
2023-07-10 | GSE206235 | GEO
2023-07-10 | GSE206234 | GEO
2023-07-10 | GSE206237 | GEO
| PRJNA596543 | ENA
2013-01-01 | E-GEOD-36451 | biostudies-arrayexpress
| PRJNA482947 | ENA
2024-07-22 | GSE272731 | GEO
2018-10-25 | GSE121737 | GEO
2015-04-20 | E-GEOD-67118 | biostudies-arrayexpress