Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Variation in DNA methylation is not consistently reflected by sociality in Hymenoptera

ABSTRACT: We used pooled samples of adult females from 3 species of Hymenoptera to generate single-base resolution DNA methylation maps.

ORGANISM(S): Lasioglossum albipes Dufourea novaeangliae Neodiprion lecontei

PROVIDER: GSE93893 | GEO | 2017/07/14

SECONDARY ACCESSION(S): PRJNA362731

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Genome-wide DNA methylation map of Zebrafish liver

Project description:Using a pooled (n=10) zebrafish liver DNA, we generated base-resolution DNA methylation maps to document epigenetic landscape in zebrafish genome.

2014-10-01 | GSE59917 | GEO

Genome-wide DNA methylation map reveals widespread epigenetic variation in healthy individuals (RRBS)

Project description:Using neutrophils from a cohort of normal individuals, we generated base-resolution DNA methylation maps to document inter-individual epigenetic variation.

2015-12-01 | GSE59163 | GEO

Genome-wide DNA methylation map of Zebrafish liver

Project description:Using a pooled (n=10) zebrafish liver DNA, we generated base-resolution DNA methylation maps to document epigenetic landscape in zebrafish genome. Here we generated single-nucleotide resoultion DNA methylation map of zebrafish pooled liver sample using Reduced Representation Bisulfite Sequencing (RRBS)

2014-10-01 | E-GEOD-59917 | biostudies-arrayexpress

DNA methylomes of the fire ant Solenopsis invicta.

2013-03-27 | GSE39959 | GEO

DNA methylomes of the fire ant Solenopsis invicta.

Project description:We used whole bodies of four different adult fire ant morphs (alate queens, workers, haploid males, and diploid males) from a single polygyne colony to generate single-base resolution DNA methylation maps. DNA was extracted from whole bodies of individual males, individual queens, and pooled workers. Bisulfite conversion and sequencing was performed by Beijing Genomics Institute (Shenzhen, China). Unmethylated enterobacteria phage lambda DNA (GenBank accession: J02459.1) was added to each genomic DNA sample as a control for bisulfite conversion efficiency.

2013-03-27 | E-GEOD-39959 | biostudies-arrayexpress

Genome-wide methylation and expression analysis of two breast cancer cell lines [RNA-Seq]

Project description:To improve our understanding of the relationships between methylation and expression we profiled mRNA expression and single-base resolution methylation levels for two breast cancer cell lines, MCF7 and T47D. Expression was profiled using RNA-seq. Methylation was assayed using Methyl-MAPS, which uses methylation-sensitive and -dependent restriction enzyme digests followed by high-throughput sequencing to identify methylation levels at individual CpGs (Edwards et al. 2010, Genome Research). RNA-Seq was used to generate mRNA expression profiles of MCF7 and T47D cells under standard growth conditions.

2013-06-15 | E-GEOD-45335 | biostudies-arrayexpress

Genome-wide DNA methylation map of Zebrafish male and female brain

Project description:Using 2 male and 2 female zebrafish (pool of 6) brain samples, we generated base-resolution DNA methylation maps to document sex-specific epigenetic differences.

2014-10-01 | GSE59916 | GEO

Variation in DNA methylation is not consistently reflected by sociality in Hymenoptera

Project description:Variation in DNA methylation is not consistently reflected by sociality in Hymenoptera

| PRJNA362731 | ENA

Single-base resolution DNA methylation maps of rice cultivars under control and stress conditions

Project description:In this study, we aim to generate genome-scale DNA methylation profiles at single-base resolution in different rice cultivars (IR64, Nagina 22 and Pokkali) under control and stress conditions. Using high-throughput whole genome bisulfite Sequencing, we generated DNA methylation maps covering the vast majority of cytosines in the rice genome. More than 152 million high quality reads were obtained for each tissue sample using Illumina platform. We discovered extensive DNA methylation in rice cultivars, identified the context and level of methylation at each site.Numerous differentially methylated regions (DMRs) among different cultivars under control and stress conditions were identified and many of them were associated with differential gene expression. The high resolution methylome maps of different rice genotypes and differentially methylated regions will serve as reference for understanding the epigenetic regulation of stress responses in plants. Whole genome bisulfite sequencing of seven control/stressed samples from three rice cultivars (IR64, N22 and Pokkali)

2015-12-31 | E-GEOD-60288 | biostudies-arrayexpress

DNA methylation analysis by RRBS in germ cells of mice exposed to Vinclozolin

Project description:We provide quantitative maps of cytosine methylation at single base resolution by RRBS in E13.5 primordial germ cells and adult sperm purified from mice exposed to Vinclozolin.

2015-06-22 | GSE65784 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data