Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

GRO-seq analysis of MCF7 cells

ABSTRACT: We used GRO-seq to examine RNA transcription rates in MCF7 cells.

ORGANISM(S): Homo sapiens

PROVIDER: GSE96718 | GEO | 2017/06/13

SECONDARY ACCESSION(S): PRJNA379445

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

GRO-seq analysis of BJ cells

Project description:We used GRO-seq to examine RNA transcription rates in human fibroblast BJ cells.

2017-06-13 | GSE96717 | GEO

GRO-seq analysis of control and Myc-induced U2OS cells

Project description:We used GRO-seq to examine the effect of Myc activation on RNA transcription in U2OS cells. We measure in duplicates gene transcription rates in U2OS cells containing an inducible Myc expression vector that were induced or mock-treated in duplicates for 5 hours.

2015-11-04 | E-GEOD-66928 | biostudies-arrayexpress

GRO-seq analysis of control and Myc-induced U2OS cells

Project description:We used GRO-seq to examine the effect of Myc activation on RNA transcription in U2OS cells.

2015-11-04 | GSE66928 | GEO

GRO-seq from HCT116, MCF7 and SJSA cell lines treated with DMSO and Nutlin

Project description:To identify loci with transcriptionally engaged RNA polymerase, we performed GRO-seq analysis of colorectal carcinoma cell line HCT116, breast carcinoma line MCF7, and osteosarcoma line SJSA treated with MDM2 inhibitor Nutlin.

2017-08-22 | GSE86165 | GEO

GRO-seq analysis of control and senescent BJ and TIG3 cells

Project description:We used GRO-seq to examine transcriptional activities in BJ and TIG-3 cells under control conditions and after activation of oncogenic RAS_V12 that leads to Oncogene-Induced Senescence (OIS)

2018-01-29 | GSE109290 | GEO

GRO-seq on MCF7 and MDA-MB-231 breast cancer cells

Project description:GRO-seq on MCF7 and MDA-MB-231 breast cancer cells

| PRJNA578047 | ENA

GRO-seq in human CD34+ erythrocytes

Project description:Purpose: GRO-seq is a robust method to examine the nascent RNA transcriptome in the genome level Methods: The GRO-seq measures the trancription of nascent RNAs in the genome. From human CD34+ erythrocytes treated with veichle or T4 we conducted GRO-seq to examine the transcripome.

2017-09-06 | GSE102819 | GEO

GRO-seq on MCF7 and MDA-MB-231 breast cancer cells

Project description:We profiled in duplicates nascent transcription in two breast cancer cell lines: MCF7 and MDA-MB-231

2021-01-01 | GSE139004 | GEO

GRO-seq from HCT116 cells

Project description:The majority of transcription studies examine steady-state RNA . However steady-state RNA is not a true reflection of the transcriptome, because the RNA levels are affected by both transcription rate and degradation rate. In this experiment we measured the amount of transcription occurring in HCT116 colon cancer cells, regardless of degradation, using GRO-seq (global nuclear run-on sequencing). This information demonstrates that many genes have a pile-up of transcriptionally-engaged polymerase near their 5'-end. Nuclei were prepared from HCT116 cells (treated for 1hr with DMSO as control for additional GRO-seq experiments to be reported separately). Transcription run-on was performed (as per Core, L.J., Waterfall, J.J., and Lis, J.T. (2008). Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 322, 1845-1848) and nascent RNAs were purified and sequenced.

2013-03-01 | E-GEOD-38140 | biostudies-arrayexpress

GRO-seq from HCT116 cells

2013-03-01 | GSE38140 | GEO