Genomics

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Genome-wide Lsd1 chromatin occupancy in myoblast C2C12 cells by chromatin immunoprecipitation using an Lsd1 antibody followed by massive parallel sequencing


ABSTRACT: Purpose: The aim of this study is to identify the Lsd1 genome binding profile in myoblast C2C12 cells during myogenic and adipogenic differentiation. ChIP-seq libraries were prepared, sequenced using the standard Illumina protocol (HiSeq2000, single read, 50 bp v3), and mapped to the mouse mm10 reference genome by Bowtie. Data were further analyzed using the peak finding algorithm MACS 1.4.2. Homer software was used to annotate peaks, and all peaks with false discovery rate less than 1 % were included.

ORGANISM(S): Mus musculus

PROVIDER: GSE98134 | GEO | 2017/12/15

SECONDARY ACCESSION(S): PRJNA384063

REPOSITORIES: GEO

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