Project description:We performed RNA-seq analysis of control, NHR-23-depleted, SPE-44-depleted and NHR-23+SPE-44 depleted adult male animals, to identify genes regulated by NHR-23 and SPE-44.
Project description:MS2 collected on qTOF, UPLC C18 gradient of 10-100% ACN over first 12 minutes, held at 100% ACN for minute 12-14. Fungi and Bacteria grown alone and pairwise on Cheese Curd Agar, naming is fungi first then bacterial partner (if it is a pairwise culture), then biological replicate number.
CCA = cheese curd agar media control
Ecoli = E. coli K12
JB418 = Pseudomonas psychrophila sp. JB418
12 = Penicillium solitum
SAM = Penicillium camemberti
RS17 = Penicillium atramentosum
Fus = Fusarium domesticum
JB370 = Scopulariopsis strain JB370
1655 = Scopulariopsis strain 165-5
Can = Candida catenulata
Deb = Debaryomyces hansenii
Project description:MS1 collected on qTOF, UPLC C18 gradient of 10-100% ACN over first 12 minutes, held at 100% ACN for minute 12-14. Fungi and Bacteria grown alone and pairwise on Cheese Curd Agar, naming is fungi first then bacterial partner (if it is a pairwise culture), then biological replicate number. CCA = cheese curd agar media control Ecoli = E. coli K12 JB418 = Pseudomonas psychrophila sp. JB418 12 = Penicillium solitum SAM = Penicillium camemberti RS17 = Penicillium atramentosum Fus = Fusarium domesticum JB370 = Scopulariopsis strain JB370 1655 = Scopulariopsis strain 165-5 Can = Candida catenulata Deb = Debaryomyces hansenii
Project description:Transcriptome data of A. flavus was assembled under four different conditions (two strains and two media) for omics data analyses of genes related to ustiloxin production. The used two strains were the over-expressed strain (ustR-oe) of the transcription factor in ustiloxin gene cluster, ustR, and the pyrG marker complemented strain (control). The two media were V8 juice liquid and potato dextrose broth (PDB) media. The ustR-oe strain produced more ustiloxin B than the control strain, and the production is much higher in V8 than in PDB. Therefore, four different state of transcriptome could be obtained under these four conditions. The obtained transcriptome data was combined with the GEO data acc. no. GSE15435 and uesd for omics data analyses.
Project description:AB SOLID sequencing of ribosome-depleted RNA from S. Cerevisiae, S. Paradoxus, S. Mikatae, and S. Bayanus These four yeast species were grown in complete media and total RNA was sequenced.
Project description:In Aspergillus sp., BrlA is a master transcription factor essential for the induction of conidiogenesis. Sometimes it is also involved in the secondary metabolism. The aim of this study was to characterize the role of BrlA in Penicillium expansum. For that a null mutant PeΔBrlA was generated.