ABSTRACT: Raw files used to generate Scopalina hapalia network with a cosine similarity cutoff of 0.7. This network was generated from LC/MS-MS data of DCM-MeOH crude extracts
Project description:RAW Files used to generate Figures 1,2 and 4. Bacterual network with a cosine similarity score cutoff of 0.7. Network was generated from UPLC coupled infusion of extracts and culture supernatants.
Project description:Molecular networking as a dereplication strategy. Yang JY, Sanchez LM, Rath CM, Liu X, Boudreau PD, Bruns N, Glukhov E, Wodtke A, de Felicio R, Fenner A, Wong WR, Linington RG, Zhang L, Debonsi HM, Gerwick WH, Dorrestein PC. J Nat Prod. 2013 Sep 27;76(9):1686-99. doi: 10.1021/np400413s PubMedID: 24025162 RAW Files used to generate Figure 4. Bacterial network with a cosine similarity score cutoff of 0.65. This network was generated from direct infusion of extracts or direct nanoDESI-MS/MS sampling of eight bacteria, 14 known compounds
Project description:Molecular networking as a dereplication strategy. Yang JY, Sanchez LM, Rath CM, Liu X, Boudreau PD, Bruns N, Glukhov E, Wodtke A, de Felicio R, Fenner A, Wong WR, Linington RG, Zhang L, Debonsi HM, Gerwick WH, Dorrestein PC.
J Nat Prod. 2013 Sep 27;76(9):1686-99. doi: 10.1021/np400413s
PubMedID: 24025162
RAW Files used to generate Figure 3. Cyanobacterial network with a cosine similarity score cutoff of 0.65. This network was generated when extracts of cyanobacteria (six distinct collections) were separated into nine fractions based on polarity and then analyzed via LC-MS/MS with five known compounds
Project description:Enzymatic Methyl-seq (EM-seq) is an enzyme-based method giving us reliable methylome data from small amounts of purified DNA. However, it is unclear whether EM-seq library can be constructed from crude cell lysate containing genomic DNA. We evaluated the quality of EM-seq libraries directly prepared from crude cell lysate.
Project description:Raw data used to generate GNPS network for multiple matlystatin congeners, as shown in Figure 5. Cosine cut-off of 0.65. Data generated from LC-MS2 analyses.