Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

GNPS - The secreted metabolome of Streptomyces chartreusis and implications for bacterial chemistry

ABSTRACT: RAW Files used to generate Figures 1,2 and 4. Bacterual network with a cosine similarity score cutoff of 0.7. Network was generated from UPLC coupled infusion of extracts and culture supernatants.

INSTRUMENT(S): Waters Synapt G2 HDMSE

ORGANISM(S): Streptomyces Chartreusis

SUBMITTER: Julia Bandow

PROVIDER: MSV000081911 | GNPS | Thu Jan 11 01:02:00 GMT 2018

REPOSITORIES: GNPS

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

GNPS - Scopalina crude extracts

Project description:Raw files used to generate Scopalina hapalia network with a cosine similarity cutoff of 0.7. This network was generated from LC/MS-MS data of DCM-MeOH crude extracts

2020-01-31 | MSV000084879 | GNPS

GNPS - Molecular networking as a dereplication strategy -Figure 4

Project description:Molecular networking as a dereplication strategy. Yang JY, Sanchez LM, Rath CM, Liu X, Boudreau PD, Bruns N, Glukhov E, Wodtke A, de Felicio R, Fenner A, Wong WR, Linington RG, Zhang L, Debonsi HM, Gerwick WH, Dorrestein PC. J Nat Prod. 2013 Sep 27;76(9):1686-99. doi: 10.1021/np400413s PubMedID: 24025162 RAW Files used to generate Figure 4. Bacterial network with a cosine similarity score cutoff of 0.65. This network was generated from direct infusion of extracts or direct nanoDESI-MS/MS sampling of eight bacteria, 14 known compounds

2014-02-11 | MSV000078547 | GNPS

GNPS - Molecular networking as a dereplication strategy-Figure 3

Project description:Molecular networking as a dereplication strategy. Yang JY, Sanchez LM, Rath CM, Liu X, Boudreau PD, Bruns N, Glukhov E, Wodtke A, de Felicio R, Fenner A, Wong WR, Linington RG, Zhang L, Debonsi HM, Gerwick WH, Dorrestein PC. J Nat Prod. 2013 Sep 27;76(9):1686-99. doi: 10.1021/np400413s PubMedID: 24025162 RAW Files used to generate Figure 3. Cyanobacterial network with a cosine similarity score cutoff of 0.65. This network was generated when extracts of cyanobacteria (six distinct collections) were separated into nine fractions based on polarity and then analyzed via LC-MS/MS with five known compounds

2014-02-11 | MSV000078548 | GNPS

mRNA profiling in Ustilago maydis under RUS (repopulation/regrowth under starvation)

Project description:mRNAs comparison between Ustilago maydis wild type grown in diluted YEPS (control) and in cell-free supernatants of Ustilago maydis wild type treated with H202 in two different concentrations (0.4% and 0.7%).

2022-06-16 | GSE205897 | GEO

GNPS-Integration of Biochemometrics and Molecular Networking to Identify Antimicrobials in Angelica keiskei (pt 1)

Project description:data files used to produce Figure 1B and Figure 2 (left). cosine similarity score was set to 0.65, and analyses were conducted using LC-MS (Waters Acquity connected to Thermo LTQ Orbitrap XL).

2018-07-20 | MSV000082641 | GNPS

Temporal profiling and network analysis of rhythmic gene expression and novel functional gene annotation in the water flea, Daphnia pulex

Project description:We analyzed genome-wide temporal transcriptional patterns from Daphnia pulex collected over a 48 hr time period using a cosine-fitting algorithm. Additionally, using a comprehensive network modeling and analysis approach, we go beyond the standard statistical analyses of the gene expression data. By doing so, we identified novel co-regulated rhythmic genes that have similar network topological as well as functional annotations as rhythmic genes identified by the statistical analyses but that cannot be identified by cosine-fitting alone. Furthermore, we used the network approach to predict with high accuracy novel gene-function associations, thus complementing the current limited functional annotation data. Our results revealed extensive 24 hr rhythms in gene expression patterns. Moderate longitudinal study of circadian rhythm with twelve 4-hour period measurements collected over the course of 48 hours. See Supplimental Image - Modified Loop Design.png

2017-02-09 | GSE67781 | GEO

GNPS - MS/MS networking guided analysis of molecule and gene cluster families - Figure 4

Project description:Paper Title: MS/MS networking guided analysis of molecule and gene cluster families Author List: Don Duy Nguyen, Cheng-Hsuan Wu, Wilna J. Moree, Anne Lamsa, Marnix H. Medema, Xiling Zhao, Ronnie G. Gavilan, Marystella Aparicio, Librada Atencio, Chanaye Jackson, Javier Ballesteros, Joel Sanchez, Jeramie D. Watrous, Vanessa V. Phelan, Corine van de Wiel, Roland D. Kersten, Samina Mehnaz, René De Mot, Elizabeth A. Shank, Pep Charusanti, Harish Nagarajan, Brendan M. Duggan, Bradley S. Moore, Nuno Bandeira, Bernhard Ø. Palsson, Kit Pogliano, Marcelino Gutiérrez, and Pieter C. Dorrestein Citation: Proc. Natl. Acad. Sci USA 2013 110(28):E2611-2620. doi: 10.1073/pnas.1303471110 PubMedID: 23798442 Brief description of the data submitted: RAW files used to generate Figure 4. Bacterial network of Pseudoalteromonas 04M1A, OT59, and piscicida with a cosine similarity score cutoff of 0.70. This network was generated using nanoDESI-MS/MS.

2014-02-18 | MSV000078551 | GNPS

GNPS - MS/MS networking guided analysis of molecule and gene cluster families - Figure 1

Project description:Paper Title: MS/MS networking guided analysis of molecule and gene cluster families Author List: Don Duy Nguyen, Cheng-Hsuan Wu, Wilna J. Moree, Anne Lamsa, Marnix H. Medema, Xiling Zhao, Ronnie G. Gavilan, Marystella Aparicio, Librada Atencio, Chanaye Jackson, Javier Ballesteros, Joel Sanchez, Jeramie D. Watrous, Vanessa V. Phelan, Corine van de Wiel, Roland D. Kersten, Samina Mehnaz, René De Mot, Elizabeth A. Shank, Pep Charusanti, Harish Nagarajan, Brendan M. Duggan, Bradley S. Moore, Nuno Bandeira, Bernhard Ø. Palsson, Kit Pogliano, Marcelino Gutiérrez, and Pieter C. Dorrestein Citation: Proc. Natl. Acad. Sci USA 2013 110(28):E2611-2620. doi: 10.1073/pnas.1303471110 PubMedID: 23798442 Brief description of the data submitted: RAW files used to generate Figure 1. Bacterial network of 42 strains of bacilli and 18 strains of pseudomonads with a cosine similarity score cutoff of 0.70. This network was generated using nanoDESI-MS/MS.

2014-02-18 | MSV000078552 | GNPS

Homo sapiens

Project description:Antibody Array Figures

| PRJNA85209 | ENA

Spatial RNA sequencing analysis confirm ACTC1+ myofibers support a transplanted SMPC pool

Project description:Spatial transcriptomics analysis of three different experiments (describe below) identify regenerating ACTC1+ myofibers as a supportive cell type for transplanted SMPCs. Data correspond to Figures 6-7 and Extended Data Figures 8-10 in Hicks et al., "Regenerating Human Skeletal Muscle Forms an Emerging Niche In Vivo to Support PAX7 cells".

2023-09-22 | GSE243875 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data