Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

GNPS - 20240522_Carlos_Mario_2_5uL run at Functional Metabolomics Lab UCR

ABSTRACT: Plant and fungal extracts redissolved in 80/20 MeOH/water +0.1% FA. Run in positive mode at the Functional Metabolomics Lab UCR

INSTRUMENT(S): Orbitrap Exploris 480

ORGANISM(S): Fusarium (ncbitaxon:5506)

SUBMITTER: Daniel Petras

PROVIDER: MSV000094858 | GNPS | Thu May 23 18:07:00 BST 2024

REPOSITORIES: GNPS

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

20240522_Carlos_Mario_2_5uL run at Functional Metabolomics Lab UCR

Project description:Plant and fungal extracts redissolved in 80/20 MeOH/water +0.1% FA. Run in positive mode at the Functional Metabolomics Lab UCR

2024-05-23 | MSV000094858 | MassIVE

20240522_Carlos_Laura_1 Bacillus Colony extracts

Project description:Bacillus extracts resuspended in 80/20 MeOH/water + 0.1% FA and run in positive mode

2024-05-24 | MSV000094866 | MassIVE

GNPS - 20240522_Carlos_Laura_1 Bacillus Colony extracts

Project description:Bacillus extracts resuspended in 80/20 MeOH/water + 0.1% FA and run in positive mode

2024-05-24 | MSV000094866 | GNPS

RNA validation of LAB 2k v2

Project description:To study their metabolic potential in natural ecosystems, we developed a species-independent LAB microarray, containing 2,269 30-mer oligonucleotides, and targeting 406 genes that play a key role in the production of sugar catabolites, bacteriocins, exopolysaccharides, and aromas, in probiotic and biosafety characteristics, and in stress response. Also, genes linked to negative traits such as antibiotic resistance and virulence are represented. This experiment is a validation experiment, where we hybridized labelled RNA from 20 LAB strains, covering 86% of all oligos. Keywords: Platform validation experiment

2009-10-20 | GSE9140 | GEO

DNA validation of LAB 2k v2

Project description:To study their metabolic potential in natural ecosystems, we developed a species-independent LAB microarray, containing 2,269 30-mer oligonucleotides, and targeting 406 genes that play a key role in the production of sugar catabolites, bacteriocins, exopolysaccharides, and aromas, in probiotic and biosafety characteristics, and in stress response. Also, genes linked to negative traits such as antibiotic resistance and virulence are represented. This experiment is a validation experiment, where we hybridized labelled DNA from 20 LAB strains, covering 86% of all oligos. Keywords: Platform validation experiment

2009-10-20 | GSE9082 | GEO

Jmjd3-Lab UTX-Lab CUT&Tag

Project description:Jmjd3-Lab UTX-Lab CUT&Tag

| PRJNA776257 | ENA

Functional profiling of formaldehyde in yeast

Project description:Formaldehyde (FA) is a commercially important chemical with numerous and diverse uses. In this study, a functional toxicogenomics approach was utilized in the model eukaryotic yeast Saccharomyces cerevisiae to identify genes and cellular processes modulating the cellular toxicity of FA. Our results demonstrate mutant strains deficient in multiple DNA repair pathways were sensitive to FA. The SKI complex and its associated factors, which regulate mRNA degradation by the exosome, were also required for FA tolerance..

2016-11-09 | GSE83398 | GEO

Galaxea fascicularis isolate:Cleves Lab Male #20

Project description:Galaxea fascicularis isolate:Cleves Lab Male #20 Genome sequencing and assembly

| PRJNA1347812 | ENA

Comparison of Candida albicans lab strain SC5314 grown at different temperatures

Project description:Candida albicans lab strain SC5314 was grown in YPD broth at 30C and 37C from OD600=0.1 till 1.0. Cells were harvested and flash frozen in liquid nitrogen. Then the transcriptome was compared.

2022-07-18 | E-MTAB-11924 | biostudies-arrayexpress

Small RNA-seq from ENCODE/Cold Spring Harbor Lab

Project description:This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Jonathan Preall jpreall@cshl.edu (Generation 0 Data from Hannon Lab), Carrie Davis davisc@cshl.edu (experimental), Alex Dobin dobin@cshl.edu (computational), Wei Lin wlin@cshl.edu (computational), Tom Gingeras gingeras@cshl.edu (primary investigator)). If you have questions about the Genome Browser track associated with this data, contact ENCODE (mailto:genome@soe.ucsc.edu). hg18: This data was produced by Hannon lab part of Cold Spring Harbor as part of the ENCODE Project. The series depicts NextGen sequencing information for RNAs between the sizes of 20-200 nt isolated from RNA samples from tissues or sub cellular compartments of cell lines. hg19: This track depicts NextGen sequencing information for RNAs between the sizes of 20-200 nt isolated from RNA samples from tissues or sub cellular compartments from ENCODE cell lines. The overall goal of the ENCODE project is to identify and characterize all functional elements in the sequence of the human genome. hg19: This cloning protocol generates directional libraries that are read from the 5' ends of the inserts, which should largely correspond to the 5' ends of the mature RNAs. The libraries were sequenced on a Solexa platform for a total of 36, 50 or 76 cycles however the reads undergo post-processing resulting in trimming of their 3' ends. Consequently, the mapped read lengths are variable. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf

2010-10-08 | GSE24565 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data