Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

GNPS Maculalactone BGC transformed in Ecoli

ABSTRACT: This dataset includes samples of the Maculalctone biosynthetic gene cluster (mac BGC) captured in Nodularia sp. NIES-3585 and heterologously expressed in E. coli. Total = complete BGC CDEF = minimal BGC Empty vector = control

INSTRUMENT(S): impact II

ORGANISM(S): Nodularia Sp. Nies-3585 (ncbitaxon:1973477)

SUBMITTER: Tobias A.M. Gulder

PROVIDER: MSV000097078 | GNPS | Fri Feb 07 12:00:00 GMT 2025

REPOSITORIES: GNPS

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Paleofuran BGC

Project description:Paleofuran BGC

| PRJEB75212 | ENA

BGC-823 Cells: Control vs. BGC-823 Cells METTL3 Overexpressed

Project description:BGC-823 Cells: Control vs. BGC-823 Cells METTL3 Overexpressed

| PRJNA881250 | ENA

Differential gene expression between BGC-823/NC and BGC-823/MTA2, SGC-7901/NC and SGC-7901/shMTA2 cells

Project description:Metastasis associated 1 family, member 2 (MTA2) gene is classified to metastasis associated gene family. We have previously reported that MTA2 gene was overexpressed in gastric cancer tissues, correlating with tumor invasion, lymph node metastasis, and advanced TNM stage. MTA2 knockdown significantly inhibited gastric cancer cell invasion and metastasis. Yet, its molecular mechanisms are still unclear. The aim of this study is to investigate the molecular mechanisms of MTA2 in regulating malignant behaviors of gastric cancer. This experiment captures the expression data between BGC-823/NC and BGC-823/MTA2, SGC-7901/NC and SGC-7901/shMTA2 cells using Whole human genome microarray 4×44K (Design ID: 014850, Agilent technologies).

2015-04-08 | E-MTAB-3469 | biostudies-arrayexpress

Expression data from Human gastric cancer cells (BGC‐823)

Project description:The goal of this study is to analyze the expression data from Human gastric cancer cells (BGC‐823) followed by PGRN-downregulation and search potential therapeutic targets of diseases associated with Helicobacter pylori infection

2024-05-04 | GSE266076 | GEO

ChIP-Seq of Cluster situated regulators (ForJ, ForF and ForZ) of the formicamycin BGC in Streptomyces formicae

Project description:ForJ, ForF and ForZ are cluster situated regulators of the formicamycin biosynthetic gene cluster in Streptomyces forimcae. This ChIP Sequencing experiment was conducted to identify where in the genome these regulators bind in order to identify which transcripts they might regulate.

2019-05-31 | E-MTAB-8006 | biostudies-arrayexpress

Nassar2022 - Biosynthetic Gene Cluster (BGC) accession NER model

Project description:bgc-accession model is a Named Entity Recognition (NER) model that identifies and annotates the accessions of Biosynthetic Gene Clusters (BGCs) in texts.

2022-03-10 | MODEL2203040001 | BioModels

Nassar2022 - Biosynthetic Gene Cluster (BGC) action NER model

Project description:bgc-action model is a Named Entity Recognition (NER) model that identifies and annotates the actions of Biosynthetic Gene Clusters (BGCs) in texts.

2022-03-10 | MODEL2203040002 | BioModels

Nassar2022 - Biosynthetic Gene Cluster (BGC) compound NER model

Project description:bgc-compound model is a Named Entity Recognition (NER) model that identifies and annotates the compounds of Biosynthetic Gene Clusters (BGCs) in texts.

2022-03-10 | MODEL2203040004 | BioModels

Nassar2022 - Biosynthetic Gene Cluster (BGC) organism NER model

Project description:bgc-organism model is a Named Entity Recognition (NER) model that identifies and annotates the organism of Biosynthetic Gene Clusters (BGCs) in texts.

2022-03-10 | MODEL2203040007 | BioModels

Nassar2022 - Biosynthetic Gene Cluster (BGC) class NER model

Project description:bgc-class model is a Named Entity Recognition (NER) model that identifies and annotates the chemical class of Biosynthetic Gene Clusters (BGCs) in texts.

2022-03-10 | MODEL2203040003 | BioModels

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data