Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Proteomic analysis of the promotive effect of plant-derived smoke on soybean

ABSTRACT: Proteomic analysis of the promotive effect of plant-derived smoke on soybean

ORGANISM(S): Cellular Organisms

SUBMITTER: Setsuko Komatsu

PROVIDER: PXD017435 | JPOST Repository | Mon Feb 08 00:00:00 GMT 2021

REPOSITORIES: jPOST

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	Dr.Komatsu1.xml	Xml
	Dr.Komatsu2.xml	Xml
	Dr.Komatsu3.xml	Xml
	Dr.Komatsu4.xml	Xml
	Dr.Komatsu5.xml	Xml

Items per page:

1 - 5 of 20

Similar Datasets

Soybean under smoke and flooding

Project description:Soybean is an important crop with abundant protein, vegetable oil, and several phytochemicals. Meanwhile, plant-derived smoke plays a key role in plant growth. To investigate the effect of plant-derived smoke on the growth of soybean, a gel-free/label-free proteomic technique was used. The length of root including hypocotyl increased in soybean treated with 2000 ppm plant-derived smoke within 4 days. On treatment with plant-derived smoke, ribosome-related proteins increased and proteasome-related proteins decreased in roots including hypocotyl. Because arginase increased and arginosuccinate synthase/glutamine synthase decreased, the relationship between plant-derived smoke and arginine metabolism was confirmed. Metabolites related to amino acids, carboxylic acids, and sugars were mostly altered with the treatment of smoke. Amino acids related to lipid synthesis and protein phosphorylation increased; while those related to arginine metabolism intensively changed in smoke-treated soybean. In addition, nitric oxide significantly increased as well. On the other hand, under flooding stress, plant-derived smoke induced sacrifice-for-survival-mechanism-driven degradation of root tip in soybean, which promoted lateral root development during soybean recovery after flooding. These results suggest that plant-derived smoke improves early stage of growth in soybean with the balance of arginine synthesis/degradation and regulates soybean tolerance towards flooding.

2021-02-04 | PXD017367 | JPOST Repository

Proteomic analysis of the promotive effect of plant-derived smoke on plant growth of chickpe

Project description:Plant-derived smoke plays a key role in seed germination and plant growth. To investigate the effect of plant-derived smoke on chickpea, a gel-free/label-free proteomic technique was used. Germination percentage, root/shoot length, and fresh biomass were increased in chickpea treated with 2000 ppm plant-derived smoke within 6 days. On treatment with 2000 ppm plant-derived smoke for 6 days, the abundance of 90 proteins including glycolysis-related proteins significantly changed in chickpea root. Proteins related to signaling and transport were increased; however, proteins related to protein metabolism, cell, and cell wall were decreased. The sucrose synthase for starch degradation was increased and total soluble sugar was induced in chickpea. Similarly, the proteins for nitrate pathway were increased and nitrate content was improved in chickpea. On the other hand, although secondary metabolism related proteins were decreased, flavonoid contents were increased in chickpea. Based on proteomic and immuno-blot analyses, proteins related to redox homeostasis were decreased and increased in root and shoot, relatively. Furthermore, fructose-bisphosphate aldolase was increased; while, phosphotransferase and phosphoglyceromutase were decreased in glycolysis. These results suggest that plant-derived smoke improves early stage of growth in chickpea with the balance of many cascades such as glycolysis, redox homeostasis, and secondary metabolism.

2018-02-12 | PXD007875 | Pride

SK15: Effect of plant-derived smoke water on soybeans under salt stress

Project description:Effect of plant-derived smoke water on soybeans under salt stress

2023-09-04 | PXD032851 | JPOST Repository

SK05_Wheat: Proteomic analysis of the effect of plant-derived smoke in wheat under flooding stress

Project description:Proteomic analysis of the effect of plant-derived smoke in wheat under flooding stress

2023-04-13 | PXD017690 | JPOST Repository

SK_16: Proteomic analysis of the effects of plant-derived smoke in wheat under salt stress

Project description:Proteomic analysis of the effects of plant-derived smoke in wheat under salt stress.

2024-08-29 | PXD043228 | JPOST Repository

TK03_Proteome_Soybean

Project description:Proteomic analysis of the effect of plant-derived smoke on soybean during recovery after flooding stress

2018-06-13 | PXD008603 | JPOST Repository

Competitive Action of Butenolides from Plant-Derived Smoke on the Germination Process of Lettuce

Project description:Sensing environmental cues is essential for plants in order to respond properly to, adapt to and survive changes in the environment and disturbances. Smoke-derived germination active compounds are important cues which provide a strong chemical signal to seeds in the soil seed bank about the available germination niche created by the passage of fire. The germination stimulatory activity can largely be attributed to the presence of the butenolide, 3-methyl-2H-furo[2,3-c]pyran-2-one (karrikinolide; KAR1). More recently, a related fire-borne butenolide, 3,4,5-trimethylfuran-2(5H)-one (inhibenolide A; InhA), was shown to have an inhibitory effect on germination. The aim of this study was to extensively characterize the interaction of these potent smoke-derived compounds in the highly KAR1-sensitive Lactuca sativa cv. ‘Grand Rapids’ achenes.

2012-05-01 | GSE34642 | GEO

Melatonin enhances plant growth and abiotic stress tolerance in soybean plants

Project description:Melatonin is a well-known agent that plays multiple roles in animals. Its possible function in plants is less clear. In the present study, we tested the effect of melatonin (N-acetyl-5-methoxytryptamine) on soybean growth and development. Both spraying of leaves and seed-coating with melatonin significantly promoted soybean growth as judged from leaf size and plant height. This enhancement was also observed in soybean production and their fatty acid content. Melatonin increased pod number, seed number and seed weight. However, the 100-seed weight was not influenced by melatonin application. Melatonin also improved soybean tolerance to salt and drought stresses. Transcriptome analysis revealed that melatonin up-regulated the expression of many genes and alleviated the inhibitory effects of salt stress on gene expressions. Further detailed analysis of the affected pathways documents that melatonin likely achieved its promotional roles in soybean through enhancement of genes involved in cell division, photosynthesis, carbohydrate metabolism, fatty acid biosynthesis and ascorbate metabolism. Our results demonstrate that melatonin has significant potential for improving of soybean growth and seed production. Further study should uncover more about the molecular mechanisms of melatonin’s function in soybeans and other crops.

2014-08-31 | GSE57960 | GEO

Plant-derived soybean peroxidase stimulates osteoblast collagen biosynthesis and matrix mineralization

Project description:Plant-derived soybean peroxidase stimulates osteoblast collagen biosynthesis and matrix mineralization

| PRJNA706780 | ENA

Subcellular Proteomics to Understand Promotive Effect of Plant-Derived Smoke Solution on Soybean Root.

Project description:Plant-derived smoke solution enhances soybean root growth; however, its mechanism is not clearly understood. Subcellular proteomics techniques were used for underlying roles of plant-derived smoke solution on soybean root growth. The fractions of membrane and nucleus were purified and evaluated for purity. ATPase and histone were enriched in the fractions of membrane and nucleus, respectively. Principal component analysis of proteomic results indicated that the plant-derived smoke solution affected the proteins in the membrane and nucleus. The proteins in the membrane and nucleus mainly increased and decreased, respectively, by the treatment of plant-derived smoke solution compared with control. In the proteins in the plasma membrane, ATPase increased, which was confirmed by immunoblot analysis, and ATP contents increased through the treatment of plant-derived smoke solution. Additionally, although the nuclear proteins mainly decreased, the expression of RNA polymerase II was up-regulated through the treatment of plant-derived smoke solution. These results indicate that plant-derived smoke solution enhanced soybean root growth through the transcriptional promotion with RNA polymerase II expression and the energy production with ATPase accumulation.

| S-EPMC8544748 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data