Proteomics

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Orientia tsutsugamushi proteome profile host context

ABSTRACT: Emerging and neglected pathogens pose challenges as their biology is frequently poorly understood, and genetic tools often do not exist to manipulate them. Organism agnostic sequencing technologies offer a promising approach to understand the molecular processes underlying these diseases. Here we apply dual RNA-seq to Orientia tsutsugamushi (Ot), the obligate intracellular causative agent of the vector-borne human disease scrub typhus. Half the Ot genome is composed of repetitive DNA, and there is minimal collinearity in gene order between strains. Integrating RNA-seq, comparative genomics, proteomics, and machine learning, we investigated the transcriptional architecture of Ot, including operon structure and non-coding RNAs, and found evidence for wide-spread post-transcriptional antisense regulation. We compared the host response to two clinical isolates and identified distinct immune response networks that are up-regulated in response to each strain, leading to predictions of relative virulence which were confirmed in a mouse infection model. Thus, dual RNA-seq can reveal the biology and host-pathogen interactions of a poorly characterized and genetically intractable organism such as Ot.

ORGANISM(S): Cellular Organisms

SUBMITTER: Jeanne Salje 

PROVIDER: PXD017956 | JPOST Repository | Fri Jun 05 00:00:00 BST 2020

REPOSITORIES: jPOST

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20181213_JW_Orientia_Karp_1_1.raw Raw
20181213_JW_Orientia_Karp_1_2.raw Raw
20181213_JW_Orientia_Karp_1_3.raw Raw
20181213_JW_Orientia_Karp_2_1.raw Raw
20181213_JW_Orientia_Karp_2_2.raw Raw
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Publications

Studying emerging or neglected pathogens is often challenging due to insufficient information and absence of genetic tools. Dual RNA-seq provides insights into host-pathogen interactions, and is particularly informative for intracellular organisms. Here we apply dual RNA-seq to Orientia tsutsugamushi (Ot), an obligate intracellular bacterium that causes the vector-borne human disease scrub typhus. Half the Ot genome is composed of repetitive DNA, and there is minimal collinearity in gene order b  ...[more]

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