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Chickspress: a resource for chicken gene expression

ABSTRACT: Red Jungle Fowl (male and female) tissues were analyzed using LC-MS/MS. Tissues analyzed were: adipose, adrenal gland, breast muscle, cerebellum, cerebrum, gonad, heart, hypothalamus, kidney, liver, lung, pancreas, proventriculus, sciatic nerve, speen. Samples were analyzed using an LTQ Velos Pro mass spectrometer. Xtandem was used to perform spectrum searches. Databases included are NCB refseq, Ensembl, and 6-frame translation of the chicken genome.

INSTRUMENT(S): LTQ Velos

ORGANISM(S): Gallus Gallus (ncbitaxon:9031)

SUBMITTER: Fiona McCarthy

PROVIDER: MSV000080320 | MassIVE | Mon Nov 07 18:38:00 GMT 2016

SECONDARY ACCESSION(S): PXD005288

REPOSITORIES: MassIVE

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Chickspress: a resource for chicken gene expression.

McCarthy Fiona M FM Pendarvis Ken K Cooksey Amanda M AM Gresham Cathy R CR Bomhoff Matt M Davey Sean S Lyons Eric E Sonstegard Tad S TS Bridges Susan M SM Burgess Shane C SC

Database : the journal of biological databases and curation 20190101

High-throughput sequencing and proteomics technologies are markedly increasing the amount of RNA and peptide data that are available to researchers, which are typically made publicly available via data repositories such as the NCBI Sequence Read Archive and proteome archives, respectively. These data sets contain valuable information about when and where gene products are expressed, but this information is not readily obtainable from archived data sets. Here we report Chickspress (http://geneatl ...[more]

PMID: 31210271

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