Bongolan_DecellKidney_P124_Lumos
Ontology highlight
ABSTRACT:
INSTRUMENT(S): Orbitrap Fusion Lumos
ORGANISM(S): Sus Scrofa (ncbitaxon:9823)
SUBMITTER: 
Anne-Claude Gingras
PROVIDER: MSV000089423 | MassIVE | Thu May 05 10:00:00 BST 2022
SECONDARY ACCESSION(S): PXD033720
REPOSITORIES: MassIVE
Similar Datasets
Project description:Rosenthal MassIVE deposition 1:
Rosenthal_Zebrafish_TurboID_P88_SAINT5425_TurboID_injections_2021
SAINT Task ID 5425
This dataset consists of 14 raw MS files and associated peak lists and result files comprising of mRNA injections of the TurboID fused baits.
All samples were acquired on a Thermo Scientific Orbitrap Fusion mass spectrometer operated in Data Dependent Acquisition mode. All samples were prepared and analyzed by Shimon Rosenthal. The files are associated with a manuscript by Rosenthal et al. that establishes protocols for proximity-dependent biotinylation in zebrafish. Anne-Claude Gingras and Ian Scott are the corresponding authors of the manuscript (gingras@lunenfeld.ca; ian.scott@sickkids.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca).
Each MassIVE submission is associated with 5 Supplementary Files (in addition to this README file)
Table 1 describes the composition of this dataset
Table 2 lists all the peptide identification evidence (as per iProphet)
Table 3 lists the SAINTexpress interactions
Internal reference from the Gingras lab ProHits implementation:
Project: P88
Export version: VS4
SAINT Task ID: 5425
2021-05-13 | MSV000087425 | MassIVE
Project description:MassIVE title 2: Rosenthal_Zebrafish_TurboID_P88_SAINT5427_miniTurbo_injections_2021
SAINT Task ID 5427
This dataset consists of 13 raw MS files and associated peak lists and result files comprising of mRNA injections of the miniTurbo fused baits.
This README file is associated with five separate MassIVE submissions. All samples were acquired on a Thermo Scientific Orbitrap Fusion mass spectrometer operated in Data Dependent Acquisition mode. All samples were prepared and analyzed by Shimon Rosenthal. The files are associated with a manuscript by Rosenthal et al. that establishes protocols for proximity-dependent biotinylation in zebrafish.
Anne-Claude Gingras and Ian Scott are the corresponding authors of the manuscript (gingras@lunenfeld.ca; ian.scott@sickkids.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca).
Each MassIVE submission is associated with 5 Supplementary Files (in addition to this README file)
Table 1 describes the composition of this dataset
Table 2 lists all the peptide identification evidence (as per iProphet)
Table 3 lists the SAINTexpress interactions
Internal reference from the Gingras lab ProHits implementation:
Project: P88
Export version: VS4
SAINT Task ID: 5427
2021-05-14 | MSV000087428 | MassIVE
Project description:MassIVE title 4: Rosenthal_Zebrafish_TurboID_P88_SAINT5429_miniTurbo_transgenics_2021
SAINT Task ID 5429
This dataset consists of 9 raw MS files and associated peak lists and result files comprising of transgenics (heat-shock) analysis of the miniTurbo fused baits.
This README file is associated with five separate MassIVE submissions. All samples were acquired on a Thermo Scientific Orbitrap Fusion mass spectrometer operated in Data Dependent Acquisition mode. All samples were prepared and analyzed by Shimon Rosenthal. The files are associated with a manuscript by Rosenthal et al. that establishes protocols for proximity-dependent biotinylation in zebrafish.
Anne-Claude Gingras and Ian Scott are the corresponding authors of the manuscript (gingras@lunenfeld.ca; ian.scott@sickkids.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca).
Each MassIVE submission is associated with 5 Supplementary Files (in addition to this README file)
Table 1 describes the composition of this dataset
Table 2 lists all the peptide identification evidence (as per iProphet)
Table 3 lists the SAINTexpress interactions
Internal reference from the Gingras lab ProHits implementation:
Project: P88
Export version: VS4
SAINT Task ID: as listed below
2021-05-14 | MSV000087430 | MassIVE
Project description:MassIVE title 3: Rosenthal_Zebrafish_TurboID_P88_SAINT5428_TurboID_transgenics_2021
SAINT Task ID 5428
This dataset consists of 9 raw MS files and associated peak lists and result files comprising of transgenics (heat-shock) analysis of the TurboID fused baits.
This README file is associated with five separate MassIVE submissions. All samples were acquired on a Thermo Scientific Orbitrap Fusion mass spectrometer operated in Data Dependent Acquisition mode. All samples were prepared and analyzed by Shimon Rosenthal. The files are associated with a manuscript by Rosenthal et al. that establishes protocols for proximity-dependent biotinylation in zebrafish.
Anne-Claude Gingras and Ian Scott are the corresponding authors of the manuscript (gingras@lunenfeld.ca; ian.scott@sickkids.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca).
Each MassIVE submission is associated with 5 Supplementary Files (in addition to this README file)
Table 1 describes the composition of this dataset
Table 2 lists all the peptide identification evidence (as per iProphet)
Table 3 lists the SAINTexpress interactions
Internal reference from the Gingras lab ProHits implementation:
Project: P88
Export version: VS4
SAINT Task ID: 5428
2021-05-14 | MSV000087429 | MassIVE
Project description:MassIVE title 5 Rosenthal_Zebrafish_TurboID_P88_SAINT5454_TurboID_transgenics_conditions_2021
SAINT Task ID 5454
This dataset consists of 22 raw MS files and associated peak lists and result files comprising of transgenics (heat-shock) analysis of the TurboID and comparison of conditions (biotin and heat shock timing and concentration).
This README file is associated with five separate MassIVE submissions. All samples were acquired on a Thermo Scientific Orbitrap Fusion mass spectrometer operated in Data Dependent Acquisition mode. All samples were prepared and analyzed by Shimon Rosenthal. The files are associated with a manuscript by Rosenthal et al. that establishes protocols for proximity-dependent biotinylation in zebrafish.
Anne-Claude Gingras and Ian Scott are the corresponding authors of the manuscript (gingras@lunenfeld.ca; ian.scott@sickkids.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca).
Each MassIVE submission is associated with 5 Supplementary Files (in addition to this README file)
Table 1 describes the composition of this dataset
Table 2 lists all the peptide identification evidence (as per iProphet)
Table 3 lists the SAINTexpress interactions
Internal reference from the Gingras lab ProHits implementation:
Project: P88
Export version: VS4
SAINT Task ID: 5454
2021-05-14 | MSV000087431 | MassIVE
Project description:This dataset consists of 6 raw MS files and associated peak lists and results files, acquired on Orbitrap Elite mass spectrometer operated in Data Dependent Acquisition mode.
Samples were generated by YiQing Lu. BioID and Mass spectrometry acquisition was performed by Zhen-Yuan Lin. Analysis was performed by YiQing Lu, Anne-Claude Gingras, and Daniel Schramek.
The files are associated with a manuscript submitted for publication by YiQing Lu et al. The main goal of this paper was to identify novel interactors of wild-type and p53 mutants commonly found in cancer. This dataset profiles the interactomes of C16orf72 in U2-OS cells.
Daniel Schramek is the corresponding author of the manuscript (schramek@lunenfeld.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca)
This submission is associated with 3 Supplementary Files (in addition to this README file)
Table 1 describes the composition of this dataset
Table 2 lists all the peptide identification evidence (as per iProphet)
Table 3 lists the SAINTexpress interactions
2023-12-11 | MSV000093632 | MassIVE
Project description:This dataset consists of 6 raw MS files and associated peak lists and results files, acquired on Orbitrap Elite mass spectrometer operated in Data Dependent Acquisition mode.
Samples were generated by YiQing Lu. BioID and Mass spectrometry acquisition was performed by Zhen-Yuan Lin. Analysis was performed by YiQing Lu, Anne-Claude Gingras, and Daniel Schramek.
The files are associated with a manuscript submitted for publication by YiQing Lu et al. The main goal of this paper was to identify novel interactors of wild-type and p53 mutants commonly found in cancer. This dataset profiles the interactomes of C16orf72 in HEK293 cells.
D
Daniel Schramek is the corresponding author of the manuscript (schramek@lunenfeld.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca)
This submission is associated with 3 Supplementary Files (in addition to this README file)
Table 1 describes the composition of this dataset
Table 2 lists all the peptide identification evidence (as per iProphet)
Table 3 lists the SAINTexpress interactions
2023-12-11 | MSV000093630 | MassIVE
Project description:This dataset consists of 15 raw MS files and associated peak lists and results files, acquired on AB Sciex TripleTOF 6600 mass spectrometer operated in Data Dependent Acquisition mode.
Samples were generated by Camila Aprosoff. FLAG-AP and Mass spectrometry acquisition was performed by Zhen-Yuan Lin. Analysis was performed by Cassandra Wong and Boris Dyakov.
The files are associated with a manuscript submitted for publication by Camila Aprosoff et al. The main goal of this paper was to investigate SLX4 as a scaffold for DNA repair and chromatin-associated proteins. This dataset comprehensively maps the interactome of SLX4 using proximity labeling and affinity purification.
Anne-Claude Gingras is the corresponding author of the manuscript (gingras@lunenfeld.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca)
This submission is associated with 3 Supplementary Files (in addition to this README file)
Table 1 describes the composition of this dataset
Table 2 lists all the peptide identification evidence (as per iProphet)
Table 3 lists the SAINTexpress interactions
| MSV000090314 | MassIVE
Project description:This dataset consists of 20 raw MS files and associated peak lists and results files, acquired on AB Sciex TripleTOF 6600 mass spectrometer operated in Data Dependent Acquisition mode.
Samples were generated by YiQing Lu. BioID and Mass spectrometry acquisition was performed by Zhen-Yuan Lin. Analysis was performed by YiQing Lu, Anne-Claude Gingras, and Daniel Schramek.
The files are associated with a manuscript submitted for publication by YiQing Lu et al. The main goal of this paper was to identify novel interactors of wild-type and p53 mutants commonly found in cancer. This dataset profiles the interactomes of novel p53 interactors (CCDC6 and FBXO42)
Daniel Schramek is the corresponding author of the manuscript (schramek@lunenfeld.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca)
This submission is associated with 3 Supplementary Files (in addition to this README file)
Table 1 describes the composition of this dataset
Table 2 lists all the peptide identification evidence (as per iProphet)
Table 3 lists the SAINTexpress interactions
2023-12-11 | MSV000093628 | MassIVE
Project description:This dataset consists of 12 raw MS files and associated peak lists and results files, acquired on AB Sciex TripleTOF 5600 mass spectrometer operated in Data Dependent Acquisition mode.
Samples were generated by Yichao Zhao. Immunoprecipitation and mass spectrometry acquisition was performed by Zhen-Yuan Lin. Analysis was performed by Yichao Zhao, Zhen-Yuan Lin, Anne-Claude Gingras and Daniel Durocher.
The files are associated with a manuscript submitted for publication by Yichao Zhao et al. The main goal of this paper was to identify genes that suppress DNA damage in human cells. This dataset comprehensively maps the interactome of GNB1L using proximity labeling coupled to affinity purification.
Daniel Durocher is the corresponding author of the manuscript (durocher@lunenfeld.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca)
This submission is associated with 3 Supplementary Files (in addition to this README file)
Table 1 describes the composition of this dataset
Table 2 lists all the peptide identification evidence (as per iProphet)
Table 3 lists the SAINTexpress interactions
2023-06-15 | MSV000092179 | MassIVE