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De novo nine-species benchmark peptide identifications for Casanovo and other methods

ABSTRACT: Predicted peptides for the 9-species de novo sequencing benchmark MSV000090982 as described in Yilmaz et al. [Yilmaz2023]. FTP directory contains outputs of 5 de novo peptide sequencing methods on the 9-species benchmark: Casanovo, Casanovo_bm (benchmark), PointNovo, DeepNovo and Novor. [Yilmaz2023] M. Yilmaz*, W. Fondrie*, W. Bittremieux*, R. Nelson, V. Ananth, S. Oh, and W. Noble,"Sequence-to-sequence translation from mass spectra to peptides with a transformer model", bioRxiv, 2023

INSTRUMENT(S): Q Exactive

ORGANISM(S): Bacillus Subtilis (ncbitaxon:1423) Candidatus Thiodiazotropha Endoloripes (ncbitaxon:1818881) Vigna Mungo (ncbitaxon:3915) Solanum Lycopersicum (ncbitaxon:4081) Saccharomyces Cerevisiae (ncbitaxon:4932) Homo Sapiens (ncbitaxon:9606) Mus Musculus (ncbitaxon:10090) Methanosarcina Mazei (ncbitaxon:2209) Apis Mellifera (ncbitaxon:7460)

SUBMITTER: William Noble

PROVIDER: MSV000093979 | MassIVE | Thu Feb 01 23:40:00 GMT 2024

REPOSITORIES: MassIVE

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De novo nine-species benchmark peptide identifications for Casanovo and other methods

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