B._Raktan_Ahmed_P131_VS15_2024
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ABSTRACT: This dataset consists of 363 raw MS files and associated peak lists and result files, acquired on a TripleTOF 6600 mass spectrometer operated in Data Independent Acquisition mode (SWATH). It also includes the sequence database used for analysis and the MSPLIT spectral library which was generated from paired samples acquired in Data Dependent Acquisition (DDA) mode.
All sample generation, streptavidin affinity purification, mass spectrometric acquisition, and data analysis was performed by B. Raktan Ahmed.
The files are associated with a manuscript submitted for publication by Dyakov et al. that provides a spatial map of nuclear body-associated proteins with a focus on the paraspeckle and nuclear speckle.
Anne-Claude Gingras is the corresponding author of the manuscript and should be contacted for questions about this dataset (gingras@lunenfeld.ca).
This submission is associated with 4 Supplementary Files (in addition to this README file):
Table 1 describes the composition of this dataset
Table 2 lists the protein evidence for the entire dataset
Table 3 lists the SAINT output (results)
Internal reference from the Gingras lab ProHits implementation:
Project: P131
Export version VS15
SAINT Task ID: 6779
INSTRUMENT(S): TripleTOF 6600
ORGANISM(S): Homo Sapiens (ncbitaxon:9606)
SUBMITTER: Anne-Claude Gingras
PROVIDER: MSV000094294 | MassIVE | Tue Mar 12 09:43:00 GMT 2024
SECONDARY ACCESSION(S): PXD050558
REPOSITORIES: MassIVE
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