Proteomics

Dataset Information

0

Fission yeast metabolome dynamics during phosphate starvation and replenishment


ABSTRACT: Inorganic phosphate is an essential nutrient acquired by cells from their environment and assimilated into myriad intracellular metabolites and macromolecules. Here we characterize the metabolic responses of fission yeast to a 24-h interval of phosphate starvation, during which cells enter a state of G0 quiescence. Time-resolved profiling revealed that many key phosphometabolites were progressively depleted, including: (i) NTPs, NDPs, and dNTPs; (ii) coenzyme A, NAD+, NADP+, NADH, and ADP-ribose; (iii) glycolysis pathway intermediates upstream of pyruvate; (iv) pentose phosphate pathway intermediates from 6-phosphogluconate to sedoheptulose-7-phosphate; (v) nucleotide sugars GDP-glucose/mannose, UDP-glucose/galactose, and UDP-GalNAc/GluNAc; and (vi) phospholipid precursors glycerol-3-phosphate, CDP-choline, and glycerophosphocholine. By contrast, early Krebs cycle intermediates accumulated during phosphate starvation. Other metabolic changes included: (i) interdiction of de novo pyrimidine synthesis; (ii) depletion of S-adenosylmethionine and S-adenosylhomocysteine; (iii) transient accumulation of polyamine biosynthetic intermediates putrescine, S-adenosylmethioninamine and 5-methylthioadenosine; (iv) accumulation of betaine (correlating with an increase in expression of atd1 mRNA encoding aldehyde dehydrogenase); and (v) depletion of aminoadipate pathway intermediates 2-oxoadipate, 2-aminoadipate and saccharopine. Replenishing phosphate after 24 h of starvation resulted in restoration of the metabolite levels to similar levels as non-starved controls (over 2 to 12 h) as cells exited quiescence and resumed growth.

INSTRUMENT(S): 6230A Time-of-Flight LC/MS, 6545 Q-TOF LC/MS

ORGANISM(S): Schizosaccharomyces Pombe (ncbitaxon:4896)

SUBMITTER: Stewart Shuman  

PROVIDER: MSV000096678 | MassIVE | Tue Dec 17 12:39:00 GMT 2024

REPOSITORIES: MassIVE

Similar Datasets

2023-02-18 | PXD038988 | Pride
2011-11-11 | E-MEXP-3037 | biostudies-arrayexpress
2008-10-03 | GSE11046 | GEO
2005-04-15 | E-UMCU-12 | biostudies-arrayexpress
2008-10-26 | E-GEOD-11046 | biostudies-arrayexpress
2011-11-11 | E-MEXP-3038 | biostudies-arrayexpress
2023-09-15 | GSE213323 | GEO
2020-03-01 | GSE144764 | GEO
2020-03-01 | GSE144763 | GEO
2020-03-01 | GSE144762 | GEO