Browse
Submit Data
Databases
API
Help

Dataset Information

96 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Metabolomic profiles in long day, before bolting, single leaf analysis, Arabidopsis thaliana

ABSTRACT: Metabolomic profiles in short or long day, before and after bolting, single leaf analysis, Arabidopsis thaliana

INSTRUMENT(S): GC-MS

SUBMITTER: Joachim Kopka

PROVIDER: MTBLS11 | MetaboLights | 2015-09-14

REPOSITORIES: MetaboLights

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	MTBLS11	Other
	FILES	Other
	a_MTBLS11_Metabolomic_profiles_in_long_day__before_bolting__single_leaf_analysis__Arabidopsis_thaliana.txt	Txt
	i_Investigation.txt	Txt
	m_MTBLS11_Metabolomic_profiles_in_long_day__before_bolting__single_leaf_analysis__Arabidopsis_thaliana_v2_maf.tsv	Tabular

Items per page:

1 - 5 of 6

Similar Datasets

Metabolomic profiles in short day, before bolting, single leaf analysis, Arabidopsis thaliana

Project description:Metabolomic profiles in short or long day, before and after bolting, single leaf analysis, Arabidopsis thaliana

2015-09-14 | MTBLS13 | MetaboLights

Metabolomic profiles in long day, after bolting, single leaf analysis, Arabidopsis thaliana

Project description:Metabolomic profiles in short or long day, before and after bolting, single leaf analysis, Arabidopsis thaliana

2015-09-14 | MTBLS7 | MetaboLights

Metabolomic profiles in short day, after bolting, single leaf analysis, Arabidopsis thaliana

Project description:Metabolomic profiles in short or long day, before and after bolting, single leaf analysis, Arabidopsis thaliana

2015-09-14 | MTBLS12 | MetaboLights

Arabidopsis thaliana leaf parallel analysis of RNA ends

Project description:Arabidopsis thaliana leaf parallel analysis of RNA ends

2018-06-25 | GSE113958 | GEO

Arabidopsis thaliana leaf / E.coli / MEF proteomes label-free shotgun

Project description:Proteomic comparison of Arabidopsis thaliana leaf / E.coli / MEF proteomes generated by digestion with legumain, GluC and trypsin.

2020-01-20 | PXD014696 | Pride

Arabidopsis thaliana leaf tissue Transcriptome under normal and low CO2 environment

Project description:RNA-SEQ of Arabidopsis thaliana leaf tissues under normal and low CO2

2014-05-23 | E-MTAB-4419 | biostudies-arrayexpress

Arabidopsis thaliana leaf proteome label-free shotgun digested by Legumain at various pH

Project description:Proteomic optimisation of Arabidopsis thaliana leaf proteome generated using legumain (cleave C-terminal of asparagine/aspartic acid) as protease at different pH from pH 5.0 to pH 6.5.

2020-01-20 | PXD014698 | Pride

Arabidopsis thaliana 25 accessions

Project description:Waters Raw data can be downloaded for shoot- and root parts of Arabidopsis thaliana accessions.

2018-11-14 | ST001096 | MetabolomicsWorkbench

Arabidopsis thaliana leaf, stem and flower tissues.

Project description:Analysis of gene expression in Arabidopsis thaliana leaf, stem and flower tissues. Columbia (Col-0) Arabidopsis thaliana plants were grown at a density of 4 plants per 5 inch square pot either in a growth chamber or a green house set to 25*C by day, 20*C by night. Days were set to a 16hr photoperiod with 125 micro mol m-2s-1 fluorescent irradiation. Expanding leaves were harvested 15 days post germination in the middle of the photoperiod (3 replicates). Expanding upper 2" of the stem with siliques and pedicels removed were harvested 29 days post germination in the middle of the photoperiod (4 replicates). Developed flowers and unopened buds were harvested 29 days post germination in the middle of the photoperiod (4 replicates). RNA and Microarray Methods: Total RNA was extracted from the plants using the Trizol method (Invitrogen, Ramonell et al. (2002) Mol. Plant Pathol. 3: 301) and purified with a silica membrane column (Qiagen, RNeasy). Twenty micrograms biotinylated complementary RNA (cRNA) was prepared as described (Hernan et al. (2003) Cancer Res. 63, 140) from the purified total RNA. The resulting cRNA was used to hybridize ATH1 Arabidopsis GeneChips (Affymetrix) using the manufacturer's protocols. The array images were analyzed with the Affymetrix Microarray Suite 5.0 software with the target intensity set to 500. Normalized signal intensities were generated by multiplying signal intensities by ratio figure which set GapC (ID_REF = 258588_s_at) to 8500. Keywords: other

2003-08-27 | GSE607 | GEO

smRNAs in wildtype and RDR6-15 knockout Arabidopsis thaliana Col-0 leaf

Project description:This set consists of small RNAs sequenced from two replicates of wildtype and two replicates of RDR6-15 knockout Arabidopsis thaliana Col-0 leaf samples. RDR6 is required for the production of tasRNAs (trans-acting small RNAS) and so tags associated with the tasRNA loci should be severely down-regulated or absent in the knockout compared to wildtype. The set can thus be used as containing known true positives for testing differential expression detection methods.

2010-11-22 | GSE16959 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data