Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Fragaria iinumae

ABSTRACT: Fragaria iinumae: FII_r1.1 (Strawberry whole-genome sequencing)

PROVIDER: PRJDB1478 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	BATU01.dat.gz	Other
	BATU01.fasta.gz	Fasta.gz
	BATU01.master.dat	Other
	BATU01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Fragaria iinumae

Project description:Fragaria iinumae: FII_r1.1 (Strawberry whole-genome sequencing)

| PRJDB1478 | ENA

Fragaria iinumae

Project description:Fragaria iinumae Genome sequencing and assembly

| PRJNA392946 | ENA

Comprehensive transcriptomic dataset for early stage fruit development in woodland strawberry Fragaria vesca

Project description:Fragaria vesca, a diploid woodland strawberry with a small and sequenced genome, is an excellent model for studying fruit development. The strawberry fruit is unique in that the edible flesh is actually enlarged receptacle tissue. The true fruit are the numerous dry achenes dotting the receptacleM-^Rs surface. Auxin produced from the achene is essential for the receptacle fruit set, a paradigm for studying crosstalk between hormone signaling and development. To investigate the molecular mechanism underlying strawberry fruit set, next-generation sequencing was employed to profile early-stage fruit development with five fruit tissue types and five developmental stages from floral anthesis to enlarged fruits. This two-dimensional data set provides a systems-level view of molecular events with precise spatial and temporal resolution.

2013-10-01 | E-MTAB-1902 | biostudies-arrayexpress

Fragaria iinumae

Project description:diploid Fragaria species

| PRJNA243257 | ENA

Fragaria orientalis

Project description:Fragaria orientalis: FOR_r1.1 (Strawberry whole-genome sequencing)

| PRJDB1481 | ENA

Fragaria nipponica

Project description:Fragaria nipponica: FNI_r1.1 (Strawberry whole-genome sequencing)

| PRJDB1479 | ENA

Fragaria nubicola

Project description:Fragaria nubicola: FNU_r1.1 (Strawberry whole-genome sequencing)

| PRJDB1480 | ENA

Construction of a subtracted gDNA microarray for rapid discovery of molecular markers associated with day-neutrality in strawberry (Fragaria x ananassa)

Project description:Breeding day-neutral strawberry (Fragaria x ananassa Duchesne) is pivotal to extend fruit-bearing season and increase the efficiency of production. However, genetic improvement of day-neutrality by the means of molecular marker technologies remains slow due to genome complexity of octoploid strawberry. This study employs an innovative approach by integrating the Subtracted Diversity Array (SDA) technology and Bulked Segregant Analysis (BSA) to facilitate the identification of molecular markers associated with day-neutrality in octoploid strawberry. A Fragaria Discovery Panel (FDP) containing 287 features specific to strawberry genome was constructed as a platform for rapid screening of DNA polymorphism between one short day (SD) strawberry DNA bulk and three day-neutral (DN) bulks varrying in flowering strength. Differential array hybridisation patterns between the DN and SD bulks revealed a novel molecular marker, FaP2E11, closely linked to CYTOKININ OXIDASE 1 (CKX1) gene possibly involved in promoting flowering under non-inductive condition. Interestingly, a 12 bp deletion was observed within the FaP2E11 sequence cloned from SD genotypes but not DN genotypes. As cytokinin is required to induce flowering, this result indicates that full sequence of FaP2E11 and the sequence with deletion are allelic variants linked to the low enzyme activity CKX1 and the wild type alleles, respectively.

2017-02-09 | GSE70145 | GEO

Fragaria iinumae

Project description:Fragaria iinumae Raw sequence reads

| PRJNA301619 | ENA

Fragaria x ananassa strain:Reikou

Project description:Fragaria x ananassa: FAN_r1.1 (Strawberry whole-genome sequencing)

| PRJDB1477 | ENA