Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bombyx mori

ABSTRACT: Transcriptome of BmMLV-infected silkworm cultured cells

PROVIDER: PRJDB3935 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR035919_1.fastq.gz	Fastqsanger.gz
	DRR035919_2.fastq.gz	Fastqsanger.gz
	DRR035920_1.fastq.gz	Fastqsanger.gz
	DRR035920_2.fastq.gz	Fastqsanger.gz
	DRR035921_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

Bombyx mori

Project description:Transcriptome of BmMLV-infected silkworm cultured cells

| PRJDB3935 | ENA

Bombyx mori

Project description:Small RNA sequences of BmMLV-infected silkworm cultured cells

| PRJDB5144 | ENA

Bombyx mori

Project description:Transcriptome of silkworm midgut infected with BmNPV Bm124 mutants

| PRJDB3932 | ENA

Bombyx mori strain:BmN4

Project description:Genomic DNA sequence of silkworm cultured cells

| PRJDB13727 | ENA

Bombyx mori strain:BmN4

Project description:Genomic DNA sequence of silkworm cultured cells

| PRJDB14909 | ENA

MicroRNAs of Bombyx mori identified by Solexa sequencing

Project description:Background: MicroRNA (miRNA) and other small regulatory RNAs contribute to the modulation of a large number of cellular processes. We sequenced three total RNA libraries prepared from the whole body, and the anterior and posterior silk glands of Bombyx mori, with a view to expanding the repertoire of silkworm miRNAs and exploring transcriptional differences in miRNAs between segments of the silk gland. Results: With the aid of large-scale Solexa sequencing technology, we validated 244 unique miRNA genes, including 191 novel and 53 previously reported genes, corresponding to 309 loci in the silkworm genome. Interestingly, 24 unique miRNAs were widely conserved from invertebrates to vertebrates; 12 unique ones were limited to invertebrates and 33 were confined to insects; whereas the majority of the newly identified miRNAs were silkworm-specific. We identified 21 clusters and 42 paralogs of miRNAs in the silkworm genome. However, sequence tags showed that paralogs or clusters are not prerequisites for coordinated transcription and accumulation. The majority of silkworm-specific miRNAs are located in transposable elements, and display significant differences in abundance between the anterior and posterior silk glands. Conclusions: Conservative analysis revealed that miRNAs serve as phylogenetic markers and function in evolutionary signaling. The newly identified miRNAs greatly enriched the repertoire of insect miRNAs, and provide insights into miRNA evolution, biogenesis, and expression in insects. The differential expression of miRNAs in the anterior and posterior silk glands supports their involvement as new layers in the regulation of the silkworm silk gland.

2010-02-01 | GSE17965 | GEO

Bombyx mori

Project description:Transcriptome of silkworm midgut infected with BmNPV Bm95 and Bm124 mutants

| PRJDB3934 | ENA

Bombyx mori

Project description:Host reponse of silkworm, Control vs. Nb infected

| PRJNA221874 | ENA

Bombyx mori

Project description:Transcriptome of silkworm midgut orally infected with wild-type and Bm105 viruses

| PRJDB3933 | ENA

Bombyx mori strain:BmN-4

Project description:mRNA sequences of silkworm cultured cells with adipocyte differentiation