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Echinochloa crus-galli genome analysis provides insight into its adaptation and invasiveness as a weed

ABSTRACT: Echinochloa crus-galli genome analysis provides insight into its adaptation and invasiveness as a weed.

PROVIDER: PRJEB22102 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	OAMR01.dat.gz	Other
	OAMR01.fasta.gz	Fasta.gz
	OAMR01.master.dat	Other
	OAMR01.dat.gz	Other

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Echinochloa crus-galli genome analysis provides insight into its adaptation and invasiveness as a weed.

Project description:Barnyardgrass (Echinochloa crus-galli) is a pernicious weed in agricultural fields worldwide. The molecular mechanisms underlying its success in the absence of human intervention are presently unknown. Here we report a draft genome sequence of the hexaploid species E. crus-galli, i.e., a 1.27?Gb assembly representing 90.7% of the predicted genome size. An extremely large repertoire of genes encoding cytochrome P450 monooxygenases and glutathione S-transferases associated with detoxification are found. Two gene clusters involved in the biosynthesis of an allelochemical 2,4-dihydroxy-7-methoxy-1,4-benzoxazin-3-one (DIMBOA) and a phytoalexin momilactone A are found in the E. crus-galli genome, respectively. The allelochemical DIMBOA gene cluster is activated in response to co-cultivation with rice, while the phytoalexin momilactone A gene cluster specifically to infection by pathogenic Pyricularia oryzae. Our results provide a new understanding of the molecular mechanisms underlying the extreme adaptation of the weed.

| S-EPMC5647321 | biostudies-literature

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